1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gctttttcagtgtctgatggatacctacttttgtttgctcgtttattttgcgtttttttattgttatagtaaccttattacatagttgttttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGAGGTTTGGGTTTTCAACTTCAGCCCCCCAACAAGATGATAAGGAGACAA
species | Zea mays |
transcript | GRMZM2G002440_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|211486479|gb|FL110811.1|FL110811
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCATGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|211483602|gb|FL110803.1|FL110803
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCATGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|211159401|gb|FL365678.1|FL365678
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCATGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|211486475|gb|FL110807.1|FL110807
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|211519817|gb|FL338576.1|FL338576
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|211543369|gb|FL321070.1|FL321070
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCATGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTACGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|211356792|gb|FL332225.1|FL332225
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCATGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|211309955|gb|FL324302.1|FL324302
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCATGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|211483605|gb|FL110806.1|FL110806
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCATGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|211483601|gb|FL110802.1|FL110802
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCATGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|211365235|gb|FL351459.1|FL351459
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTTYAEST: gi|50332491|gb|CO527617.1|CO527617
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTC-A
EST: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|211486478|gb|FL110810.1|FL110810
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCATGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|211010679|gb|FL358969.1|FL358969
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|211037801|gb|FL314005.1|FL314005
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCATGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|211086851|gb|FL356798.1|FL356798
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCATG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|211536909|gb|FL308322.1|FL308322
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCATGGGGGCGCCTGTGCTTGCTACTGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|101400819|gb|EB822107.1|EB822107
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|211486477|gb|FL110809.1|FL110809
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|211486476|gb|FL110808.1|FL110808
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCATGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|211483603|gb|FL110804.1|FL110804
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
ttttgcgtttttttattgttatagtaaccttattacatagttgttttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGAGGTTTGGGTTTTCAACTTCAGCCCCCCAACAAGATGATAAGGAGACAA
tagtaac putative branch site (score: 117)
ttgtttt putative PPT
tttttttattgttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctttttcagtgtctgatggatacctacttttgtttgctcgtttattttgcgtttttttattgttatagtaaccttattacatagttgttttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGAGGTTTGGGTTTTCAACTTCAGCCCCCCAACAAGATGATAAGGAGACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - -ctgatgg
- - - - - - - - - - - - - - - -tgtttgc