1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gctttttcagtgtctgatggatacctacttttgtttgctcgtttattttgcgtttttttattgttatagtaaccttattacatagttgttttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGAGGTTTGGGTTTTCAACTTCAGCCCCCCAACAAGATGATAAGGAGACAA
species | Zea mays |
transcript | GRMZM2G002440_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCATGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|50328195|gb|CO523321.1|CO523321
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|211483602|gb|FL110803.1|FL110803
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCATGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|211159401|gb|FL365678.1|FL365678
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCATGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|211486475|gb|FL110807.1|FL110807
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|211519817|gb|FL338576.1|FL338576
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|78085561|gb|DV513954.1|DV513954
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|211543369|gb|FL321070.1|FL321070
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCATGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTACGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|211356792|gb|FL332225.1|FL332225
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCATGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|211021444|gb|FL345712.1|FL345712
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCATGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAACCACCCGGCTCGATACTCGACAACTGCATTTCAGEST: gi|211309955|gb|FL324302.1|FL324302
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCATGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|211483605|gb|FL110806.1|FL110806
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCATGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|211483601|gb|FL110802.1|FL110802
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCATGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|211486476|gb|FL110808.1|FL110808
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCATGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|148953359|gb|EE152852.2|EE152852
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|8102608|gb|AW927411.1|AW927411
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|211365235|gb|FL351459.1|FL351459
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTTYAEST: gi|211281454|gb|FL334418.1|FL334418
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTC-A
EST: TCATGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|22473207|gb|BU037687.1|BU037687
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|78088183|gb|DV516576.1|DV516576
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|211486478|gb|FL110810.1|FL110810
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCATGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|74234070|gb|DT641984.1|DT641984
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|211010679|gb|FL358969.1|FL358969
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|211037801|gb|FL314005.1|FL314005
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCATGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|31358187|gb|CD442544.1|CD442544
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GGCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|5268619|gb|AI770583.1|AI770583
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|211086851|gb|FL356798.1|FL356798
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCATG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|74240578|gb|DT648492.1|DT648492
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|87156524|gb|DY401313.1|DY401313
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|101394439|gb|EB819154.1|EB819154
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|211483603|gb|FL110804.1|FL110804
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|67036127|gb|CO464098.1|CO464098
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|211486477|gb|FL110809.1|FL110809
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|26558683|gb|CA830918.1|CA830918
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|71325779|gb|DR799570.1|DR799570
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|148956597|gb|EC902445.2|EC902445
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGEST: gi|21843362|gb|BQ703943.1|BQ703943
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: TCCTGGGGGCGCCTGTGCTGGCTACGGCCGAAGCCTGCGCTTCGATCAAG GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
ttttgcgtttttttattgttatagtaaccttattacatagttgttttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGAGGTTTGGGTTTTCAACTTCAGCCCCCCAACAAGATGATAAGGAGACAA
tagtaac putative branch site (score: 1)
ttgtttt putative PPT
tttttttattgttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctttttcagtgtctgatggatacctacttttgtttgctcgtttattttgcgtttttttattgttatagtaaccttattacatagttgttttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAGAGGTTTGGGTTTTCAACTTCAGCCCCCCAACAAGATGATAAGGAGACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA