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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tccagctggttttaaattaaatgcaggaagagtattttgttcttaatttctttttcttagagactactagtagagtgattgacctttcctgttactgcagGCTAGGCAAAAGGGCATGGCACAAGGCACCCAATTGAATAATGCTAATACAGCTCAAGCGCTACAAGGGATGCAGCACATGGGTGTCATGGGTACTATGG

Basic information

species Zea mays
transcript GRMZM2G002276_T01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32809157|gb|CD961391.1|CD961391
EST:     GATCTGCGGCACATTTTGGGCTTCAGTCGCAGATGATGGCGCAG                         GCTAGGCAAAAGGGCATGGCACAAGGCACCCAATTGAATAATGCTAATACA
genomic: GATCTGCGGCACATTTTGGGCTTCAGTCGCAGATGATGGCGCAGgtgaactact ... gttactgcagGCTAGGCAAAAGGGCATGGCACAAGGCACCCAATTGAATAATGCTAATACA
EST: gi|31356055|gb|CD440412.1|CD440412
EST:     ACGCGGGATCTGCGGCACATTTTGGGCTTCAGTCGCAGATGATGGCGCAG                         GCTAGGCAAAAGGGCATGGCACAAGGCACCCAATTGAATAATGCTAATACA
genomic: ACGCGGGATCTGCGGCACATTTTGGGCTTCAGTCGCAGATGATGGCGCAGgtgaactact ... gttactgcagGCTAGGCAAAAGGGCATGGCACAAGGCACCCAATTGAATAATGCTAATACA
EST: gi|78075147|gb|DV503581.1|DV503581
EST:     ACGCGGGATCTGCGGCACATTTTGGGCTTCAGTCGCAGATGATGGCGCAG                         GCTAGGCAAAAGGGCATGGCACAAGGCACCCAATTGAATAATGCTAATACA
genomic: ACGCGGGATCTGCGGCACATTTTGGGCTTCAGTCGCAGATGATGGCGCAGgtgaactact ... gttactgcagGCTAGGCAAAAGGGCATGGCACAAGGCACCCAATTGAATAATGCTAATACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttctttttcttagagactactagtagagtgattgacctttcctgttactgcagGCTAGGCAAAAGGGCATGGCACAAGGCACCCAATTGAATAATGCTAATACAGCTCAAGCGCTACAAGGGATGCAGCACATGGGTGTCATGGGTACTATGG
                               gattgac  putative branch site (score: 3)
                                     cctttcctgttact  CT-rich tract
     tttttctta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tccagctggttttaaattaaatgcaggaagagtattttgttcttaatttctttttcttagagactactagtagagtgattgacctttcctgttactgcagGCTAGGCAAAAGGGCATGGCACAAGGCACCCAATTGAATAATGCTAATACAGCTCAAGCGCTACAAGGGATGCAGCACATGGGTGTCATGGGTACTATGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA