1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...caaattgtgtactgattccggacaaatgttactacatattggttctatccgttgccgttactgaacaaattgtgtactgatttttttgtgtttcatacagATGAATGTTGAAAAGCTCAAGAAGATGGCAGGTGCTGTGCGCACCGGGGGGAAGGGTAGCGTGCGCAG
species | Zea mays |
transcript | GRMZM2G001887_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTTTGGCCTAGGAGCTGCTGGATCTGCACGTTTAGCCCGGTTACGTACAT ATGAATGTTGAAAAGCTCAAGAAGATGGCAGGTGCTGTGCGCACCNNNNNN
genomic: GTTTGGCCTAGGAGCTGCTGGATCTGCACGTTTAGCCCGGTTACGTACATgtgcgtttgc ... tttcatacagATGAATGTTGAAAAGCTCAAGAAGATGGCAGGTGCTGTGCGCACC-GGGGG
tatccgttgccgttactgaacaaattgtgtactgatttttttgtgtttcatacagATGAATGTTGAAAAGCTCAAGAAGATGGCAGGTGCTGTGCGCACCGGGGGGAAGGGTAGCGTGCGCAG
tactgat putative branch site (score: 5)
tttttttgtgtttc CT-rich tract
atttttttgtgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaattgtgtactgattccggacaaatgttactacatattggttctatccgttgccgttactgaacaaattgtgtactgatttttttgtgtttcatacagATGAATGTTGAAAAGCTCAAGAAGATGGCAGGTGCTGTGCGCACCGGGGGGAAGGGTAGCGTGCGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG