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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgccgtgtgcgtgcgtgtgatcctccatgcgcaaagagtacaacgtttcttgtgataaaaatcgtcaggatatatttgaagttgtggattttaattcaactagcttctccatgcatatgcccagAATCAGTATGCGACGGTGTTCTCGAGCATCGTGTCGAGAGCTGCGACGCTGGAGGTGCTGTCCACCGGCGTGGCTGGGAACTACAATGGCGCATTGCAAG

Basic information

species Zea mays
transcript GRMZM2G001289_T03
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|160481559|gb|EY254391.1|EY254391
EST:     TCATCATGGA-CCATGCCAGCCTCGTCGAGATCCTCATGGACGTG                         AATCAGTATGCGACGGTGTTCTCGAGCATCGTGTCGAGAGCTGCGACGCTG
genomic: TCATCAT-GACCCATGCCAGCCTCGTCGAGATCCTCATGGACGTGgtatgtgccg ... atatgcccagAATCAGTATGCGACGGTGTTCTCGAGCATCGTGTCGAGAGCTGCGACGCTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatatttgaagttgtggattttaattcaactagcttctccatgcatatgcccagAATCAGTATGCGACGGTGTTCTCGAGCATCGTGTCGAGAGCTGCGACGCTGGAGGTGCTGTCCACCGGCGTGGCTGGGAACTACAATGGCGCATTGCAAG
                   ttttaat  putative branch site (score: 3)
                  attttaattcaacta  TA-rich tract