1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtcctctctcttcaatatatcatgtatatatgtgaacctagctagctagctcactgatctccccttgcagCTGATCCCTGCTGCTCACTCCCATGGCGCAAGGTGAGGAGAGCTCGTGGTGCATGGCGAGCAGCGATCATGGTAGAGCTGCACCATTCGTCCAAGCAGTC
species | Zea mays |
transcript | GRMZM2G000842_T04 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAAACCACAAGGGTGATTCAGCTTACCACTGTCGGCTCCTTCTATGCATG CTGATCCCTGCTGCTCACTCCCATGGCGCAAGGTGAGGAGAGCTCGTGGTGEST: gi|71435856|gb|DR816906.1|DR816906
genomic: AAAACCACAAGGGTGATTCAGCTTACCACTGTCGGCTCCTTCTATGCATGgtcctctctc ... ccccttgcagCTGATCCCTGCTGCTCACTCCCATGGCGCAAGGTGAGGAGAGCTCGTGGTG
EST: AAAACCACAAGGGTGATTCAGCTTACCACTGTCGGCTCCTTCTATGCATG CTGATCCCTGCTGCTCACTCCCATGGCGCAAGGTGAGGAGAGCTCGTGGTGEST: gi|71439738|gb|DR820788.1|DR820788
genomic: AAAACCACAAGGGTGATTCAGCTTACCACTGTCGGCTCCTTCTATGCATGgtcctctctc ... ccccttgcagCTGATCCCTGCTGCTCACTCCCATGGCGCAAGGTGAGGAGAGCTCGTGGTG
EST: AAAACCACAAGGGTGATTCAGCTTACCACTGTCGGCTCCTTCTATGCATG CTGATCCCTGCTGCTCACTCCCATGGCGCAAGGTGAGGAGAGCTCGTGGTGEST: gi|91869980|gb|EB400639.1|EB400639
genomic: AAAACCACAAGGGTGATTCAGCTTACCACTGTCGGCTCCTTCTATGCATGgtcctctctc ... ccccttgcagCTGATCCCTGCTGCTCACTCCCATGGCGCAAGGTGAGGAGAGCTCGTGGTG
EST: AAAACCACAAGGGTGATTCAGCTTACCACTGTCGGCTCCTTC--T--AT- CTGATCCCTGCTGCTCACTCCCATGGCGCAAGGTGAGGAGAGCTCGTGGTGEST: gi|76015224|gb|DT942394.1|DT942394
genomic: AAAACCACAAGGGTGATTCAGCTTACCACTGTCGGCTCCTTCTATGCATGgtcctctctc ... ccccttgcagCTGATCCCTGCTGCTCACTCCCATGGCGCAAGGTGAGGAGAGCTCGTGGTG
EST: AAAACCACAAGGGTGATTCAGCTTACCACTGTCGGCTCCTTCTATGCATG CTGATCCCTGCTGCTCACTCCCATGGCGCAAGGTGAGGAGAGCTCGTGGTG
genomic: AAAACCACAAGGGTGATTCAGCTTACCACTGTCGGCTCCTTCTATGCATGgtcctctctc ... ccccttgcagCTGATCCCTGCTGCTCACTCCCATGGCGCAAGGTGAGGAGAGCTCGTGGTG
tatatcatgtatatatgtgaacctagctagctagctcactgatctccccttgcagCTGATCCCTGCTGCTCACTCCCATGGCGCAAGGTGAGGAGAGCTCGTGGTGCATGGCGAGCAGCGATCATGGTAGAGCTGCACCATTCGTCCAAGCAGTC
cactgat putative branch site (score: 2)
tctccccttgc CT-rich tract
atgtatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcctctctcttcaatatatcatgtatatatgtgaacctagctagctagctcactgatctccccttgcagCTGATCCCTGCTGCTCACTCCCATGGCGCAAGGTGAGGAGAGCTCGTGGTGCATGGCGAGCAGCGATCATGGTAGAGCTGCACCATTCGTCCAAGCAGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC