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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttaccttcttgaaaaaaaattaagctttttatctgctttgccttatattgcatatggctgccattggtgctgaacttgctgcgctactgcttggcccagGGAGTTGCAACCTGCAGCAGCTGCTCCTTATTACTTTGGTGAGTTGGAGGAGGCCCTTTATCCATGGCACCCGTACATCTGTTGATCACGGCATGATCGG

Basic information

species Zea mays
transcript GRMZM2G000842_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G000842_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os05g37170.3 (Oryza sativa), 3'ss of exon 1
tttaccttcttgaaaaaaaattaagctttttatctgctttgccttatattgcatatggctg-------ccattggtgctgaacttgctgcgctactgcttggcccagGGAGTTGCAACCTGCAGCAGCTGCTCCTTATTACTTTGGTGAGTTGGAGGAGGCCCTTTATCCATGGCACCCGTAC------ATCTGTTGATCACGGCATGATCGG-
   || ||| ||||||    || || |||||||||| |   || ||||||||||||||||        |||  |||| ||||     ||| ||||||||||| |||||||||||||||||||||| ||||||      |||||||||||||||||| |||||||| |||||||||||| || |         ||| ||||| |||||||||   
---acattcctgaaaag---ttcag-tttttatctgttcgtccatatattgcatatggctattgactaccacaggtgttgaatgctgtgctctactgcttggtccagGGAGTTGCAACCTGCAGCTGCTGCT------TACTTTGGTGAGTTGGAGAAGGCCCTT-ATCCATGGCACCAGTGCTGGTGCTGGTGTCGATCATGGCATGATCCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78108047|gb|DV526465.1|DV526465
EST:     GCGTGTGGAACCCAAAGGCGCGCTTCTGCCGCACAACCTGCCAATTTCTT                         GGAGTTGCAACCTGCAGCAGCTGCTCCTTATTACTTTGGTGAGTTGGAGGA
genomic: GCGTGTGGAACCCAAAGGCGCGCTTCTGCCGCACAACCTGCCAATTTCTTgtactgctgc ... cttggcccagGGAGTTGCAACCTGCAGCAGCTGCTCCTTATTACTTTGGTGAGTTGGAGGA