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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtgtagtgtagtgcgtgcgtgcgtttctccccgcggatgggttcgactcaatctgatttggagttcctttgcgccgctgcagCTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATCAACGCCGGAGACCGCGTTGACAGCGCGCTCAAGGACATGGCCATCGTGA

Basic information

species Zea mays
transcript GRMZM2G000825_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G000825_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os09g36740.1 (Oryza sativa), 3'ss of exon 1
gtacgtgtagtgtagtgcgtgcgtgcgtttctccccgcggatgggttcgactcaatctgatttggagttcctttgcgccgctgcagCTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATCAACGCCGGAGACCGCGTTGACAGCGCGCTCAAGGACATGGCCATCGTGA
|||||||      | |||| ||| |||||  |    | || | || | |     ||  | ||  ||      | | |   | ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||| ||||| || |||||||||||||||||||||||||||||||
gtacgtg------attgcgagcgagcgttcttgatggtggtttggattgg---gattgggttgtgatggtggtggtgattcggcagCTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGGCGGCGATCAACGCCGGCGACCGGGTGGACAGCGCGCTCAAGGACATGGCCATCGTGA

upper sequence: GRMZM2G000825_T02 (Zea mays), 3'ss of exon 1
lower sequence: EFJ08332 (Selaginella moellendorffii), 3'ss of exon 1
gtacgtgtagtgtagtgcgtgcgtgcgtttctccccgcggatgggttcgactcaatctgatttggagttcctttgcg---ccgct----gcagCTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATCAACGCCGGAGACCGCGTTGACAGCGCGCTCAAGGACATGGCCATCGTGA
|||   | |  | |     | | | || | |   |    ||| |||    | |  |||    | |  |  ||  | |   || ||    |||||||||||||||||| ||||| ||||| |||||||| ||||||   |||||||| || || |||||||| ||||||||||||||||||||||| |||||||
gtaaaagaaagggaccaattccatccgat-cgatcgatcgatcggtcgcgcactgtctcgcatcgcatctctgagagaacccccttttggcagCTGGTGGACAAGGAGCCGGACAAGGCCATCGCGCTCTTCTGGGCGGCGATCAATGCGGGCGACCGCGTGGACAGCGCGCTCAAGGACATGGCGATCGTGA

upper sequence: GRMZM2G000825_T02 (Zea mays), 3'ss of exon 1
lower sequence: EFJ30150 (Selaginella moellendorffii), 3'ss of exon 1
gtacgtgtagtgtagtgcgtgcgtgcgtttctccccgcggatgggttcgactcaatctgatttggagttcctttgcg---ccgct----gcagCTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATCAACGCCGGAGACCGCGTTGACAGCGCGCTCAAGGACATGGCCATCGTGA
|||   | |  | |     | | | || | |   |    ||| |||    | |  |||    | |  |  ||  | |   || ||    |||||||||||||||||| || || ||||| |||||||| ||||||   |||||||| || || ||||| || ||||||||||||||||||||||| |||||||
gtaaaagaaagggaccaattccatccgat-cgatcgatcgatcggtcgcgcactgtctcgcatcgcatctctgagagaacccccttttggcagCTGGTGGACAAGGAGCCCGACAAGGCCATCGCGCTCTTCTGGGCGGCGATCAATGCGGGCGACCGTGTGGACAGCGCGCTCAAGGACATGGCGATCGTGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71427346|gb|DR808396.1|DR808396
EST:     ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAG                         CTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
genomic: ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAGgtacgtgtag ... gccgctgcagCTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
EST: gi|50339882|gb|CO535008.1|CO535008
EST:     ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAG                         CTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
genomic: ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAGgtacgtgtag ... gccgctgcagCTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
EST: gi|149206098|gb|ES701694.1|ES701694
EST:     ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAG                         CTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
genomic: ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAGgtacgtgtag ... gccgctgcagCTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
EST: gi|78091042|gb|DV519416.1|DV519416
EST:     ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAG                         CTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
genomic: ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAGgtacgtgtag ... gccgctgcagCTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
EST: gi|211337533|gb|FK986458.1|FK986458
EST:     ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAG                         CTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
genomic: ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAGgtacgtgtag ... gccgctgcagCTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
EST: gi|78074236|gb|DV502670.1|DV502670
EST:     ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAG                         CTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
genomic: ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAGgtacgtgtag ... gccgctgcagCTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
EST: gi|71329748|gb|DR801587.1|DR801587
EST:     ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAG                         CTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
genomic: ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAGgtacgtgtag ... gccgctgcagCTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
EST: gi|71332935|gb|DR803491.1|DR803491
EST:     ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAG                         CTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
genomic: ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAGgtacgtgtag ... gccgctgcagCTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
EST: gi|94476522|gb|EB705480.1|EB705480
EST:     ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAG                         CTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
genomic: ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAGgtacgtgtag ... gccgctgcagCTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
EST: gi|50338121|gb|CO533247.1|CO533247
EST:     ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAG                         CTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
genomic: ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAGgtacgtgtag ... gccgctgcagCTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
EST: gi|91050311|gb|EB160729.1|EB160729
EST:     ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAG                         CTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
genomic: ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAGgtacgtgtag ... gccgctgcagCTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
EST: gi|71427332|gb|DR808382.1|DR808382
EST:     ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAG                         CTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
genomic: ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAGgtacgtgtag ... gccgctgcagCTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
EST: gi|78123617|gb|DV542001.1|DV542001
EST:     ACAAGGTGCCGGTCGGCGACACCCCCTACGTGCGAGCCAAGCGCGTCCAG                         CTGGTGGACAAGGATCCGGAAAAGGCGATCGCGCTGTTCTGGAGTGCGATC
genomic: ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAGgtacgtgtag ... gccgctgcagCTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
EST: gi|211431813|gb|FL298794.1|FL298794
EST:     ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAG                         CTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
genomic: ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAGgtacgtgtag ... gccgctgcagCTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
EST: gi|91053161|gb|EB163579.1|EB163579
EST:     ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAG                         CTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
genomic: ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAGgtacgtgtag ... gccgctgcagCTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
EST: gi|71773443|gb|DR971345.1|DR971345
EST:     ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAG                         CTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
genomic: ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAGgtacgtgtag ... gccgctgcagCTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
EST: gi|71309463|gb|DR791018.1|DR791018
EST:     ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAG                         CTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
genomic: ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAGgtacgtgtag ... gccgctgcagCTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
EST: gi|71441995|gb|DR823045.1|DR823045
EST:     ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAG                         CTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
genomic: ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAGgtacgtgtag ... gccgctgcagCTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
EST: gi|37421391|gb|CF648394.1|CF648394
EST:     ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAG                         CTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
genomic: ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAGgtacgtgtag ... gccgctgcagCTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
EST: gi|50324554|gb|CO519680.1|CO519680
EST:     ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAG                         CTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
genomic: ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAGgtacgtgtag ... gccgctgcagCTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
EST: gi|91049686|gb|EB160104.1|EB160104
EST:     ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAG                         CTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
genomic: ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAGgtacgtgtag ... gccgctgcagCTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
EST: gi|50336187|gb|CO531313.1|CO531313
EST:     ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAG                         CTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
genomic: ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAGgtacgtgtag ... gccgctgcagCTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
EST: gi|91872937|gb|EB402894.1|EB402894
EST:     ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAG                         CTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
genomic: ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAGgtacgtgtag ... gccgctgcagCTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
EST: gi|211337530|gb|FK986455.1|FK986455
EST:     ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAG                         CTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
genomic: ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAGgtacgtgtag ... gccgctgcagCTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
EST: gi|71773656|gb|DR971553.1|DR971553
EST:     ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAG                         CTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
genomic: ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAGgtacgtgtag ... gccgctgcagCTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
EST: gi|71449759|gb|DR830809.1|DR830809
EST:     ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAG                         CTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
genomic: ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAGgtacgtgtag ... gccgctgcagCTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
EST: gi|78091200|gb|DV519574.1|DV519574
EST:     ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAG                         CTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
genomic: ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAGgtacgtgtag ... gccgctgcagCTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
EST: gi|71772102|gb|DR970039.1|DR970039
EST:     ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAG                         CTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
genomic: ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAGgtacgtgtag ... gccgctgcagCTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
EST: gi|71771752|gb|DR969689.1|DR969689
EST:     ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAG                         CTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
genomic: ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAGgtacgtgtag ... gccgctgcagCTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
EST: gi|78085350|gb|DV513743.1|DV513743
EST:     ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAG                         CTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
genomic: ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAGgtacgtgtag ... gccgctgcagCTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
EST: gi|50339616|gb|CO534742.1|CO534742
EST:     ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAG                         CTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
genomic: ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAGgtacgtgtag ... gccgctgcagCTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
EST: gi|71324131|gb|DR798765.1|DR798765
EST:     ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAG                         CTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC
genomic: ACAAGGTGCCGGTCGGCGACACGCCCTACGTGCGAGCCAAGCGCGTCCAGgtacgtgtag ... gccgctgcagCTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccccgcggatgggttcgactcaatctgatttggagttcctttgcgccgctgcagCTGGTGGACAAGGATCCGGAGAAGGCGATCGCGCTGTTCTGGAGTGCGATCAACGCCGGAGACCGCGTTGACAGCGCGCTCAAGGACATGGCCATCGTGA
                       atctgat  putative branch site (score: 4)