1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttttatgatcttgtgatccctagcatggttctaaggcccaagtatattcttttccctacctttgtgcaaagcctgtaatgatgtggccgataaaattcagGAAGTGCTGGTGACGTGTTGGAAGATAACCCTGTTGGGAGGCTCAAGGTTTACGTGTATGATCTCCCCAGTAAATACAACAAGAAGCTGGTGAAGAAGGA
species | Zea mays |
transcript | GRMZM2G000581_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGCTGAGGCCCAGGCGGTCCAGCAGGGCCACCAGACAGAGAGGATCTCAG GAAGTGCTGGTGACGTGTTGGAAGATAACCCTGTTGGGAGGCTCAAGGTTTEST: gi|71445197|gb|DR826247.1|DR826247
genomic: GGCTGAGGCCCAGGCGGTCCAGCAGGGCCACCAGACAGAGAGGATCTCAGgtgagaccgt ... taaaattcagGAAGTGCTGGTGACGTGTTGGAAGATAACCCTGTTGGGAGGCTCAAGGTTT
EST: GGCTGAGGCCCAGGCGGTCCAGCAGGGCCACCAGACAGAGAGGATCTCAG GAAGTGCTGGTGACGTGTTGGAAGATAACCCTGTTGGGAGGCTCAAGGTTTEST: gi|211387689|gb|FK948893.1|FK948893
genomic: GGCTGAGGCCCAGGCGGTCCAGCAGGGCCACCAGACAGAGAGGATCTCAGgtgagaccgt ... taaaattcagGAAGTGCTGGTGACGTGTTGGAAGATAACCCTGTTGGGAGGCTCAAGGTTT
EST: GGCTGAGGCCCAGGCGGTCCAGCAGGGCCACCAGACAGAGAGGATCTCAG GAAGTGCTGGTGACGTGTTGGAAGATAACCCTGTTGGGAGGCTCAAGEST: gi|76911648|gb|DV164366.1|DV164366
genomic: GGCTGAGGCCCAGGCGGTCCAGCAGGGCCACCAGACAGAGAGGATCTCAGgtgagaccgt ... taaaattcagGAAGTGCTGGTGACGTGTTGGAAGATAACCCTGTTGGGAGGCTCAAG
EST: GGCTGAGGCCCAGGCGGTCCAGCAGGGCCACCAGACAGAGAGGATCTCAG GAAGTGCTGGTGACGTGTTGGAAGATAACCCTGTTGGGAGGCTCAAGGTTTEST: gi|19822698|gb|BQ048722.1|BQ048722
genomic: GGCTGAGGCCCAGGCGGTCCAGCAGGGCCACCAGACAGAGAGGATCTCAGgtgagaccgt ... taaaattcagGAAGTGCTGGTGACGTGTTGGAAGATAACCCTGTTGGGAGGCTCAAGGTTT
EST: GGCTGAGGCCCAGGCGGTCCAGCAGGGCCACCAGACAGAGAGGATCTCAG GAAGTGCTGGTGACGTGTTGGAAGATAACCCTGTTGGGAGGCTCAAGGTTTEST: gi|22489627|gb|BU049550.1|BU049550
genomic: GGCTGAGGCCCAGGCGGTCCAGCAGGGCCACCAGACAGAGAGGATCTCAGgtgagaccgt ... taaaattcagGAAGTGCTGGTGACGTGTTGGAAGATAACCCTGTTGGGAGGCTCAAGGTTT
EST: GGCTGAGGCCCAGGCGGTCCAGCAGGGCCACCAGACAGAGAGGATCTCAG GAAGTGCTGGTGACGTGTTGGAAGATAACCCTGTTGGGAGGCTCAAGGTTT
genomic: GGCTGAGGCCCAGGCGGTCCAGCAGGGCCACCAGACAGAGAGGATCTCAGgtgagaccgt ... taaaattcagGAAGTGCTGGTGACGTGTTGGAAGATAACCCTGTTGGGAGGCTCAAGGTTT
attcttttccctacctttgtgcaaagcctgtaatgatgtggccgataaaattcagGAAGTGCTGGTGACGTGTTGGAAGATAACCCTGTTGGGAGGCTCAAGGTTTACGTGTATGATCTCCCCAGTAAATACAACAAGAAGCTGGTGAAGAAGGA
ataaaattca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttatgatcttgtgatccctagcatggttctaaggcccaagtatattcttttccctacctttgtgcaaagcctgtaatgatgtggccgataaaattcagGAAGTGCTGGTGACGTGTTGGAAGATAACCCTGTTGGGAGGCTCAAGGTTTACGTGTATGATCTCCCCAGTAAATACAACAAGAAGCTGGTGAAGAAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - gcatggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcctgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgatgt