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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgccccccctgcccgctcagatccctgacactttgatccagcacccgatagggagtcgtgatcttattcctggctccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAAGAGCTCTACCAGC

Basic information

species Zea mays
transcript GRMZM2G000393_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G000393_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os06g07905.2 (Oryza sativa), 3'ss of exon 1
----gtacgccccccctgcccgctcagatccctgac--actttgatccagcacccgatagggagtcgtgatcttattcctggctccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAAGAGCTCTACCAGC
    |||||| | ||| || |||||||||||  |    | ||   |  ||    |     |      ||||   |||  |       |  |||  ||||||||||||||||||| |||  ||||||||| || |||||||||||||||||   ||  
gtacgtacgcgcgccc-gcgcgctcagatccggggggaatttccgtggagttttctgattgtttcgttgattggattttt----tttttgcagGCTGTGGCAGGACGCGCAGACGCGGATGATCCTGTCTGGTCTCCTCGAGAAGAGCTCCGGCAAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148982630|gb|EE028428.2|EE028428
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|78093005|gb|DV521379.1|DV521379
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|6626361|gb|AW257893.1|AW257893
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|211109595|gb|FL330293.1|FL330293
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|149106895|gb|EE188795.2|EE188795
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|76920610|gb|DV168260.1|DV168260
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|31359008|gb|CD443365.1|CD443365
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|211264751|gb|FL317287.1|FL317287
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|211262310|gb|FL317272.1|FL317272
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|78022345|gb|DV490732.1|DV490732
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|31357853|gb|CD442210.1|CD442210
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|211070150|gb|FL344929.1|FL344929
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|149096405|gb|EE182139.2|EE182139
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|22819731|gb|BU499821.1|BU499821
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|211035632|gb|FL325397.1|FL325397
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|211309691|gb|FL309467.1|FL309467
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|211208342|gb|FL339681.1|FL339681
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|211177142|gb|FL336670.1|FL336670
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|88752412|gb|DY536553.1|DY536553
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACG
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACG
EST: gi|211537774|gb|FL336420.1|FL336420
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|15208952|gb|BI430836.1|BI430836
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|211507519|gb|FL321825.1|FL321825
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|211335749|gb|FL352451.1|FL352451
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|211130919|gb|FL136657.1|FL136657
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|211061191|gb|FL322363.1|FL322363
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|211312454|gb|FL348222.1|FL348222
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|21843330|gb|BQ703911.1|BQ703911
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|149005474|gb|EE040029.2|EE040029
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|211365022|gb|FL342943.1|FL342943
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|50323553|gb|CO518679.1|CO518679
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|89250822|gb|DY622608.1|DY622608
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|211257460|gb|FL317713.1|FL317713
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|211378656|gb|FL357034.1|FL357034
EST:     CTCGTCATGGCCTTCCTCTCCTGSCTCGCCTGGCTCTACGTCGCCGGGCG                         TTTGTGGCAGGACGCGCAGWCCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|94479524|gb|EB708482.1|EB708482
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCCCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|149064607|gb|EE286478.2|EE286478
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|71311661|gb|DR792235.1|DR792235
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|211492170|gb|FL337340.1|FL337340
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|148994442|gb|EE034088.2|EE034088
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|71435123|gb|DR816173.1|DR816173
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|71448461|gb|DR829511.1|DR829511
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|22521196|gb|BU080007.1|BU080007
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|211308207|gb|FL338834.1|FL338834
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|211211310|gb|FL358291.1|FL358291
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|21390137|gb|BQ528186.1|BQ528186
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|211401858|gb|FL337637.1|FL337637
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|78090931|gb|DV519305.1|DV519305
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|5525207|gb|AI861205.1|AI861205
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|211281812|gb|FL349985.1|FL349985
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|211281262|gb|FL322093.1|FL322093
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|211340421|gb|FL351902.1|FL351902
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|211183427|gb|FL326865.1|FL326865
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|211543122|gb|FL312498.1|FL312498
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|211510671|gb|FL361525.1|FL361525
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|67038278|gb|CO464608.1|CO464608
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|211263236|gb|FL358750.1|FL358750
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|211283190|gb|FL330913.1|FL330913
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|211015023|gb|FL312922.1|FL312922
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|211439880|gb|FL309180.1|FL309180
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|211120329|gb|FL321087.1|FL321087
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|211135055|gb|FL315830.1|FL315830
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|71436237|gb|DR817287.1|DR817287
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|211425180|gb|FL347842.1|FL347842
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|211528488|gb|FL328390.1|FL328390
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|71772160|gb|DR970097.1|DR970097
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|211507246|gb|FL308755.1|FL308755
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|148938471|gb|EC882790.2|EC882790
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|211430698|gb|FL357575.1|FL357575
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|211149416|gb|FL321996.1|FL321996
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGT
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGT
EST: gi|211325278|gb|FL366950.1|FL366950
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|211155637|gb|FL334262.1|FL334262
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|71426994|gb|DR808044.1|DR808044
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|211222355|gb|FL320279.1|FL320279
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGSCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
EST: gi|149084753|gb|EE174248.2|EE174248
EST:     CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCG                         TTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA
genomic: CTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccc ... tccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actttgatccagcacccgatagggagtcgtgatcttattcctggctccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAAGAGCTCTACCAGC
 ctttgat  putative branch site (score: 5)
                                            ctccgtctc  putative PPT
                               atcttatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacgccccccctgcccgctcagatccctgacactttgatccagcacccgatagggagtcgtgatcttattcctggctccgtctcagTTTGTGGCAGGACGCGCAGACCCGGGCGATCCTGTCCGGCCTCCTCGAGAAGAGCTCTACCAGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT