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gtgggtttcgtgcctttttccccctccatgatttcgtcctccgcgccgcgtgatttcaggcggggaaacggccaggctctttattgaccctgcctctacggattgcttggcttgcggggcgggattccgtcggtttccccccgggtttcgtggaattaatagtttgatttccctgattttgcagTGTTGCTTGCCCCGCCGGAGTTTTCCTCTAACCCGCAAGTCCAATTGGCTAAGAAGTTGATGGGATCGGGGGGACACTGGAAGGCTGTGTGAGATCGCGA
species | Zea mays |
transcript | GRMZM2G000052_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCTGTGCGAAGGAAATCTCCAGTTCTTCGGCCCCGGCCAGGTTTTCAAG TGTTGCTTGCCCCGCCGGAGTTTTCCTCTAACCCGCAAGTCCAATTGGCTAEST: gi|211091703|gb|FL353095.1|FL353095
genomic: TCCTGTGCGAAGGAAATCTCCAGTTCTTCGGCCCCGGCCAGGTTTTCAAGgtgggtttcg ... gattttgcagTGTTGCTTGCCCCGCCGGAGTTTTCCTCTAACCCGCAAGTCCAATTGGCTA
EST: TCCTGTGCGAAGGAAATCTCCAGTTCTTCGGCCCCGGCCAGGTTTTCAAG TGTTGCTTGCCCCGCCGGAGTTTTCCTCTAACCCGCAAGTCCAATTGGCTAEST: gi|211080232|gb|FL307134.1|FL307134
genomic: TCCTGTGCGAAGGAAATCTCCAGTTCTTCGGCCCCGGCCAGGTTTTCAAGgtgggtttcg ... gattttgcagTGTTGCTTGCCCCGCCGGAGTTTTCCTCTAACCCGCAAGTCCAATTGGCTA
EST: TCCTGTGCGAAGGAAATCTCCAGTTCTTCGGCCCCGGCCAGGTTTTCAAG TGTTGCTTGCCCCGCCGGAGTTTTCCTCTAACCCGCAAGTCCAATTGGCTAEST: gi|23357677|gb|BU645326.1|BU645326
genomic: TCCTGTGCGAAGGAAATCTCCAGTTCTTCGGCCCCGGCCAGGTTTTCAAGgtgggtttcg ... gattttgcagTGTTGCTTGCCCCGCCGGAGTTTTCCTCTAACCCGCAAGTCCAATTGGCTA
EST: TCCTGTGCGAAGGAAATCTCCAGTTCTTCGGCCCCGGCCAGGTTTTCAAG TGTTGCTTGCCCCGCCGGAGTTTTCCTCTAACCCGCAAGTCCAATTGGCTAEST: gi|37418966|gb|CF647156.1|CF647156
genomic: TCCTGTGCGAAGGAAATCTCCAGTTCTTCGGCCCCGGCCAGGTTTTCAAGgtgggtttcg ... gattttgcagTGTTGCTTGCCCCGCCGGAGTTTTCCTCTAACCCGCAAGTCCAATTGGCTA
EST: TCCTGTGCGAAGGAAATCTCCAGTTCTTCGGCCCCGGCCAGGTTTTCAAG TGTTGCTTGCCCCGCCGGAGTTTTCCTCTAACCCGCAAGTCCAATTGGCTAEST: gi|94472196|gb|EB701154.1|EB701154
genomic: TCCTGTGCGAAGGAAATCTCCAGTTCTTCGGCCCCGGCCAGGTTTTCAAGgtgggtttcg ... gattttgcagTGTTGCTTGCCCCGCCGGAGTTTTCCTCTAACCCGCAAGTCCAATTGGCTA
EST: TCCTGTGCGAAGGAAATCTCCAGTTCTTCGGCCCCGGCCAGGTTTTCAAG TGTTGCTTGCCCCGCCGGAGTTTTCCTCTAACCCGCAAGTCCAATTGGCTAEST: gi|78023763|gb|DV492150.1|DV492150
genomic: TCCTGTGCGAAGGAAATCTCCAGTTCTTCGGCCCCGGCCAGGTTTTCAAGgtgggtttcg ... gattttgcagTGTTGCTTGCCCCGCCGGAGTTTTCCTCTAACCCGCAAGTCCAATTGGCTA
EST: TCCTGTGCGAAGGAAATCTCCAGTTCTTCGGCCCCGGCCAGGTTTTCAAG TGTTGCTTGCCCCGCCGGAGTTTTCCTCTAACCCGCAAGTCCAATTGGCTAEST: gi|91870692|gb|EB401035.1|EB401035
genomic: TCCTGTGCGAAGGAAATCTCCAGTTCTTCGGCCCCGGCCAGGTTTTCAAGgtgggtttcg ... gattttgcagTGTTGCTTGCCCCGCCGGAGTTTTCCTCTAACCCGCAAGTCCAATTGGCTA
EST: TCCTGTGCGAAGGAAATCTCCAGTTCTTCGGCCCCGGCCAGGTTTTCAAG TGTTGCTTGCCCCGCCGGAGTTTTCCTCTAACCCGCAAGTCCAATTGGCTAEST: gi|101384976|gb|EB814533.1|EB814533
genomic: TCCTGTGCGAAGGAAATCTCCAGTTCTTCGGCCCCGGCCAGGTTTTCAAGgtgggtttcg ... gattttgcagTGTTGCTTGCCCCGCCGGAGTTTTCCTCTAACCCGCAAGTCCAATTGGCTA
EST: TCCTGTGCGAAGGAAATCTCCAGTTCTTCGGCCCCGGCCAGGTTTTCAAG TGTTGCTTGCCCCGCCGGAGTTTTCCTCTAACCCGCAAGTCCAATTGGCTAEST: gi|91870632|gb|EB401004.1|EB401004
genomic: TCCTGTGCGAAGGAAATCTCCAGTTCTTCGGCCCCGGCCAGGTTTTCAAGgtgggtttcg ... gattttgcagTGTTGCTTGCCCCGCCGGAGTTTTCCTCTAACCCGCAAGTCCAATTGGCTA
EST: TCCTGTGCGAAGGAAATCTCCAGTTCTTCGGCCCCGGCCAGGTTTTCAAG TGTTGCTTGCCCCGCCGGAGTTTTCCTCTAACCCGCAAGTCCAATTGGCTAEST: gi|211529116|gb|FL350179.1|FL350179
genomic: TCCTGTGCGAAGGAAATCTCCAGTTCTTCGGCCCCGGCCAGGTTTTCAAGgtgggtttcg ... gattttgcagTGTTGCTTGCCCCGCCGGAGTTTTCCTCTAACCCGCAAGTCCAATTGGCTA
EST: TCCTGTGCGAAGGAAATCTCCAGTTCTTCGGCCCCGGCCAGGTTTTCAAG TGTTGCTTGCCCCGCCGGAGTTTTCCTCTAACCCGCAAGTCCAATTGGCTAEST: gi|101398264|gb|EB821005.1|EB821005
genomic: TCCTGTGCGAAGGAAATCTCCAGTTCTTCGGCCCCGGCCAGGTTTTCAAGgtgggtttcg ... gattttgcagTGTTGCTTGCCCCGCCGGAGTTTTCCTCTAACCCGCAAGTCCAATTGGCTA
EST: TCCTGTGCGAAGGAAATCTCCAGTTCTTCGGCCCCGGCCAGGTTTTCAAG TGTTGCTTGCCCCGCCGGAGTTTTCCTCTAACCCGCAAGTCCAATTGGCTAEST: gi|211260743|gb|FL356962.1|FL356962
genomic: TCCTGTGCGAAGGAAATCTCCAGTTCTTCGGCCCCGGCCAGGTTTTCAAGgtgggtttcg ... gattttgcagTGTTGCTTGCCCCGCCGGAGTTTTCCTCTAACCCGCAAGTCCAATTGGCTA
EST: TCCTGTGCGAAGGAAATCTCCAGTTCTTCGGCCCCGGCCAGGTTTTCAAG TGTTGCTTGCCCCGCCGGAGTTTTCCTCTAACCCGCAAGTCCAATTGGCTAEST: gi|211380735|gb|FL329661.1|FL329661
genomic: TCCTGTGCGAAGGAAATCTCCAGTTCTTCGGCCCCGGCCAGGTTTTCAAGgtgggtttcg ... gattttgcagTGTTGCTTGCCCCGCCGGAGTTTTCCTCTAACCCGCAAGTCCAATTGGCTA
EST: TCCTGTGCGAAGGAAATCTCCAGTTCTTCGGCCCCGGCCAGGTTTTCAAG TGTTGCTTGCCCCGCCGGAGTTTTCCTCTAACCCGCAAGTCCAATTGGCTAEST: gi|211350009|gb|FL351959.1|FL351959
genomic: TCCTGTGCGAAGGAAATCTCCAGTTCTTCGGCCCCGGCCAGGTTTTCAAGgtgggtttcg ... gattttgcagTGTTGCTTGCCCCGCCGGAGTTTTCCTCTAACCCGCAAGTCCAATTGGCTA
EST: TCCTGTGCGAAGGAAATCTCCAGTTCTTCGGCCCCGGCCAGGTTTTCAAG TGTTGCTTGCCCCGCCGGAGTTTTCCTCTAACCCGCAAGTCCAATTGGCTAEST: gi|6022142|gb|AW067070.1|AW067070
genomic: TCCTGTGCGAAGGAAATCTCCAGTTCTTCGGCCCCGGCCAGGTTTTCAAGgtgggtttcg ... gattttgcagTGTTGCTTGCCCCGCCGGAGTTTTCCTCTAACCCGCAAGTCCAATTGGCTA
EST: TCCTGTGCGAAGGAAATCTCCAGTTCTTCGGCCCCGGCCAGGTTTTCAAG TGTTGCTTGCCCCGCCGGAGTTTTCCTCTAACCCGCAAGTCCAATTGGCTAEST: gi|211328586|gb|FL315494.1|FL315494
genomic: TCCTGTGCGAAGGAAATCTCCAGTTCTTCGGCCCCGGCCAGGTTTTCAAGgtgggtttcg ... gattttgcagTGTTGCTTGCCCCGCCGGAGTTTTCCTCTAACCCGCAAGTCCAATTGGCTA
EST: TCCTGTGCGAAGGAAATCTCCAGTTCTTCGGCCCCGGCCAGGTTTTCAAG TGTTGCTTGCCCCGCCGGAGTTTTCCTCTAACCCGCAAGTCCAATTGGCTAEST: gi|211500012|gb|FL307528.1|FL307528
genomic: TCCTGTGCGAAGGAAATCTCCAGTTCTTCGGCCCCGGCCAGGTTTTCAAGgtgggtttcg ... gattttgcagTGTTGCTTGCCCCGCCGGAGTTTTCCTCTAACCCGCAAGTCCAATTGGCTA
EST: TCCTGTGCGAAGGAAATCTCCAGTTCTTCGGCCCCGGCCAGGTTTTCAAG TGTTGCTTGCCCCGCCGGAGTTTTCCTCTAACCCGCAAGTCCAATTGGCTAEST: gi|154130459|gb|EC872163.2|EC872163
genomic: TCCTGTGCGAAGGAAATCTCCAGTTCTTCGGCCCCGGCCAGGTTTTCAAGgtgggtttcg ... gattttgcagTGTTGCTTGCCCCGCCGGAGTTTTCCTCTAACCCGCAAGTCCAATTGGCTA
EST: TCCTGTGCGAAGGAAATCTCCAGTTCTTCGGCCCCGGCCAGGTTTTCAAG TGTTGCTTGCCCCGCCGGAGTTTTCCTCTAACCCGCAAGTCCAATTGGCTA
genomic: TCCTGTGCGAAGGAAATCTCCAGTTCTTCGGCCCCGGCCAGGTTTTCAAGgtgggtttcg ... gattttgcagTGTTGCTTGCCCCGCCGGAGTTTTCCTCTAACCCGCAAGTCCAATTGGCTA
tcggtttccccccgggtttcgtggaattaatagtttgatttccctgattttgcagTGTTGCTTGCCCCGCCGGAGTTTTCCTCTAACCCGCAAGTCCAATTGGCTAAGAAGTTGATGGGATCGGGGGGACACTGGAAGGCTGTGTGAGATCGCGA
tttccctg CT-rich tract
aattaatagtttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggtttcgtgcctttttccccctccatgatttcgtcctccgcgccgcgtgatttcaggcggggaaacggccaggctctttattgaccctgcctctacggattgcttggcttgcggggcgggattccgtcggtttccccccgggtttcgtggaattaatagtttgatttccctgattttgcagTGTTGCTTGCCCCGCCGGAGTTTTCCTCTAACCCGCAAGTCCAATTGGCTAAGAAGTTGATGGGATCGGGGGGACACTGGAAGGCTGTGTGAGATCGCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC