Sequence
atgc intronic sequence ATGC exonic sequencegtagatcccttaagaatttaagatagatagggattttccaaagaatagagaccttctcgctgcattctggaataaactcactgtggatgatgccagcaaaattttgtccttgacagGTGTTGTTATTGAGGGTGTAACTGGTTCATCAATTTTGACAGCACTGTCATCATGGATGTGTAAACCAGGGTATGCTTCGTTGCCAGTTGCATATGCCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AC234522.1_FGT009 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os09g39660.2 (Oryza sativa), 3'ss of exon 4
gtagatcccttaagaatttaagatagatagggattttccaaagaata-gagaccttctcgctgcattctggaataaactcactgtggatgatgccagcaaaattttgtccttgacagGTGTTGTTATTGAGGGTGTAACTGGTTCATCAATTTTGACAGCACTGTCATCATGGATGTGTAAACCAGGGTATGCTTCGTTGCCAGTTGCATATGCCAG--------------
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-----------------------------gtaactccagaaaatatgtgcaataatgtctctggatc----agtgtgttgatcataaacagtg--atctaaagttggaatgtga-atacatt----ttcagGGTGTCACTGGTCCTTCCATTTTAGCAGCACTGTCCACATGGATGTGTAAGCCGGGGTATGCTTCATTACCGCTGCCATATGCCAGAGCTGGCAATCAAC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcattctggaataaactcactgtggatgatgccagcaaaattttgtccttgacagGTGTTGTTATTGAGGGTGTAACTGGTTCATCAATTTTGACAGCACTGTCATCATGGATGTGTAAACCAGGGTATGCTTCGTTGCCAGTTGCATATGCCAG
aactcac putative branch site (score: 2)
ttttgtcctt putative PPT
aaaattttgt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtagatcccttaagaatttaagatagatagggattttccaaagaatagagaccttctcgctgcattctggaataaactcactgtggatgatgccagcaaaattttgtccttgacagGTGTTGTTATTGAGGGTGTAACTGGTTCATCAATTTTGACAGCACTGTCATCATGGATGTGTAAACCAGGGTATGCTTCGTTGCCAGTTGCATATGCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA