1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tttttttttactgatcatgtattgtatcagatccttttttttctttaattctggtcgccattacaacttctgtttcgattgtgctgtgcgcggcaaacagAGGCGACGCCCAAGTCCGTGCTGCGGCTGATGGGAATGAAAGGGCTCACCTTGTACCACTTGAAGAGTCACCTCCAG
species | Zea mays |
transcript | AC233960.1_FGT003 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
taattctggtcgccattacaacttctgtttcgattgtgctgtgcgcggcaaacagAGGCGACGCCCAAGTCCGTGCTGCGGCTGATGGGAATGAAAGGGCTCACCTTGTACCACTTGAAGAGTCACCTCCAG
ctttaat putative branch site (score: 7)
attacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttttttactgatcatgtattgtatcagatccttttttttctttaattctggtcgccattacaacttctgtttcgattgtgctgtgcgcggcaaacagAGGCGACGCCCAAGTCCGTGCTGCGGCTGATGGGAATGAAAGGGCTCACCTTGTACCACTTGAAGAGTCACCTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - tactgat
- - - - - - - -catgtat
- - - - - - - - - - - - - - - - - - - - - - - - ttctggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgctgt