1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gaagtgcactcagtaactgtgcttactttggcttgatgatgcatactgatatcagaaaaagaaatgctaaactgttttatcacctttgcaattgcaacagACGCTCTGAAGATTGTTGTGTCTCAGTGCAAGCCAAAAGTCAAGATTGTTGACCTTTGCGAGAAGGGCGACTCTTTCATAAGAGA
species | Zea mays |
transcript | AC233895.1_FGT001 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
ctgatatcagaaaaagaaatgctaaactgttttatcacctttgcaattgcaacagACGCTCTGAAGATTGTTGTGTCTCAGTGCAAGCCAAAAGTCAAGATTGTTGACCTTTGCGAGAAGGGCGACTCTTTCATAAGAGA
tgctaaa putative branch site (score: 270)
aaaaagaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaagtgcactcagtaactgtgcttactttggcttgatgatgcatactgatatcagaaaaagaaatgctaaactgttttatcacctttgcaattgcaacagACGCTCTGAAGATTGTTGTGTCTCAGTGCAAGCCAAAAGTCAAGATTGTTGACCTTTGCGAGAAGGGCGACTCTTTCATAAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - tgcactc
- - - - - - - - - -tgcttac
- - - - - - - - - - - - - - - - ttgatga
- - - - - - - - - - - - - - - - - - - -tgcatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actgttt