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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagcatcagtatgccatatgatggattagccttttacattgattttgccctaatgattgttctatttgttaatcttgatcagATGATGTCAAGAGTTTCTTTGCAAGATATGGGACTATGGTAGACCACCAGATTATGTTTGATCACGAGACCAAACGTTCTCGAGGCTTTGGATTTATAGT

Basic information

species Zea mays
transcript AC233867.1_FGT004
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AC233867.1_FGT004 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os08g38410.3 (Oryza sativa), 3'ss of exon 4
gtagc-atcagtatgccatatgatggattagccttttacattgattttgccctaatgattgttctatttgt-taatcttgatcagATGATGTCAAGAGTTTCTTTGCAAGATATGGGACTATGGTAGACCACCAGATTATGTTTGATCACGAGACCAAACGTTCTCGAGGCTTTGGATTTATAGT
|||    ||| ||||  |||| ||   ||      | |||||  ||||  | | ||| |  |||||  ||| | || |  |||||||||| |||||  ||||||    | ||||||  || |||| ||||| |||||||||  ||||||  | ||||| ||||| ||||||||||||||||||||
gtatttgtcaatatgaaatataatttttt----cctgacatttcttttatc-tgatggtccttctacatgtatgatgt--atcagATGATTTCAAGCATTTCTTCCAGAAATATGGCCCTGTGGTGGACCATCAGATTATGCGTGATCATCAAACCAAGCGTTCACGAGGCTTTGGATTTATAGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agccttttacattgattttgccctaatgattgttctatttgttaatcttgatcagATGATGTCAAGAGTTTCTTTGCAAGATATGGGACTATGGTAGACCACCAGATTATGTTTGATCACGAGACCAAACGTTCTCGAGGCTTTGGATTTATAGT
                                       tgttaat  putative branch site (score: 3)
     tttacattgatttt  TA-rich tract