1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tggcctgattgaatgtctgtcgtcgtgctcggcttttactaggtgtgaacagtggacgctccagtttctgctggattctgtatcctgttcttactggcagTATCAGAAACTTCAGTTTCTGCTGATTGGCTAAAATTACAG
species | Zea mays |
transcript | AC216869.3_FGT001 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
tgaacagtggacgctccagtttctgctggattctgtatcctgttcttactggcagTATCAGAAACTTCAGTTTCTGCTGATTGGCTAAAATTACAG
ttcttac putative branch site (score: 2)
tcctgttctt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggcctgattgaatgtctgtcgtcgtgctcggcttttactaggtgtgaacagtggacgctccagtttctgctggattctgtatcctgttcttactggcagTATCAGAAACTTCAGTTTCTGCTGATTGGCTAAAATTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
tggcctg
- - - - ttgaatg
- - - - - - - - - - - -cgtgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgtatc