Sequence
atgc intronic sequence ATGC exonic sequencegtaaggtgtcgcctcacctctctttatgaattcctaggcattgtgggtgtggtaggtctaagcactcagagttttgctgttctactttctttcttagcttcagaagttttgggataaagagtgctactttttttttcttgtgtactctgcataatgttattcatttcttcttttggtgttgttcctgcagGAGGAACCATCTGTAGTTGGGTCCTACTATAACAAGCGGATAGTCGGCTGCCCTGGTGGTGAGGGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AC215864.3_FGT010 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g42650.1 (Oryza sativa), 3'ss of exon 3
gtaaggtgtcgcctcacctctctttatgaattcctaggcattgtgggtgtggtaggtctaagcactcagagttttgctgttctactttctttcttagcttcagaagttttgggataaagagtgcta-ctttttttttcttgtgtactctgcataatgttattcattt-cttcttttggtgttgttcctgcagGAGGAACCATCTGTAGTTGGGTCCTACTATAACAAGCGGATAGTCGGCTGCCCTGGTGGTGAGGGAG
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------------------------------------------------------------------------------------------atctgaaccatggcacattagtctcttcatttattatcttgcagcatcatttgagcaccatgtcatgttattcatcaatttgctatggtgtta--cctgcagGAGGCCCCAGCTGTCATTGAATCCTACTATAACAAGAGGATAGTTGGTTGTCCTGGTGGTGAAGGAG
upper sequence: AC215864.3_FGT010 (Zea mays), 3'ss of exon 1
lower sequence: AT3G15640.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaaggtgtcgcctcacctctctttatgaattcctaggcattgtgggtgtggtaggtctaagcactcagagttttgctgttctactttctttcttagcttcagaagttttgggataaagagtgctactttttttttcttgtgtactctgcataatgttattcatttcttcttttggtgttgttcctgcagGAGGAACCATCTGTAGTTGGGTCCTACTATAACAAGCGGATAGTCGGCTGCCCTGGTGGTGAGGGAG
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------------------------------------------------------------------ttgagtga-gcagtatt-cattttcttttggctacacaa---ttgga-----------tacttattttttcattttcttgatacacaa----atttggatgtcattttg----tattgccttagGAAGCTCCTGCTATTGTGAAGTCCTACTATGACAAGCGAATTGTGGGCTGCCCTGGTGGTGAAGGCG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcttgtgtactctgcataatgttattcatttcttcttttggtgttgttcctgcagGAGGAACCATCTGTAGTTGGGTCCTACTATAACAAGCGGATAGTCGGCTGCCCTGGTGGTGAGGGAG
ttgttcct CT-rich tract
ataatgttattcattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaggtgtcgcctcacctctctttatgaattcctaggcattgtgggtgtggtaggtctaagcactcagagttttgctgttctactttctttcttagcttcagaagttttgggataaagagtgctactttttttttcttgtgtactctgcataatgttattcatttcttcttttggtgttgttcctgcagGAGGAACCATCTGTAGTTGGGTCCTACTATAACAAGCGGATAGTCGGCTGCCCTGGTGGTGAGGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG