1 5' 3' | 2 5' 3' | 3 5' 3' |
...gaactgtgaaagaatccatgcaattcagcaagcatagaccaagaacacaactacaacaaccaaagacaccactaatggttgttacctgctactgcaacagGAGGACACATCAACCCAGCTGTGACTTTCGGGCTGTTCTTAGCCAGGAAGCTGTCCCTGACTAGGGCCCTCTTCTACATCATCATGCAATGCCTGGGTGC
species | Zea mays |
transcript | AC209208.3_FGT002 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTCGGAGGAATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG GAGGACACATCAACCCAGCTGTGACTTTCGGGCTGTTCTTAGCCAGGAAGCEST: gi|101393809|gb|EB818837.1|EB818837
genomic: CTTCGGAGGAATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtcagctctc ... actgcaacagGAGGACACATCAACCCAGCTGTGACTTTCGGGCTGTTCTTAGCCAGGAAGC
EST: CTTCGGAGGAATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG GAGGACACATCAACCCAGCTGTGACTTTCGGGCTGTTCTTAGCCAGGAAGCEST: gi|213172229|gb|FM182804.1|FM182804
genomic: CTTCGGAGGAATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtcagctctc ... actgcaacagGAGGACACATCAACCCAGCTGTGACTTTCGGGCTGTTCTTAGCCAGGAAGC
EST: CTTCGGAGGAATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG GAGGACACATCAACCCAGCTGTGACTTTCGGGCTGTTCTTAGCCAGGAAGCEST: gi|148980603|gb|EE027230.2|EE027230
genomic: CTTCGGAGGAATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtcagctctc ... actgcaacagGAGGACACATCAACCCAGCTGTGACTTTCGGGCTGTTCTTAGCCAGGAAGC
EST: CTTCGGAGGAATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG GAGGACACATCAACCCAGCTGTGACTTTCGGGCTGTTCTTAGCCAGGAAGCEST: gi|8367191|gb|BE050145.1|BE050145
genomic: CTTCGGAGGAATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtcagctctc ... actgcaacagGAGGACACATCAACCCAGCTGTGACTTTCGGGCTGTTCTTAGCCAGGAAGC
EST: CTTCGGAGGAATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG GAGGACACATCAACCCAGCTGTGACTTTCGGGCTGTTCTTAGCCAGGAAGCEST: gi|148936933|gb|EC881089.2|EC881089
genomic: CTTCGGAGGAATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtcagctctc ... actgcaacagGAGGACACATCAACCCAGCTGTGACTTTCGGGCTGTTCTTAGCCAGGAAGC
EST: CTTCGGAGGAATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG GAGGACACATCAACCCAGCTGTGACTTTCGGGCTGTTCTTAGCCAGGAAGCEST: gi|28909708|gb|CB331062.1|CB331062
genomic: CTTCGGAGGAATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtcagctctc ... actgcaacagGAGGACACATCAACCCAGCTGTGACTTTCGGGCTGTTCTTAGCCAGGAAGC
EST: CTTCGGAGGAATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG GAGGACACATCAACCCAGCTGTGACTTTCGGGCTGTTCTTAGCCAGGAAGCEST: gi|31910067|gb|CD651238.1|CD651238
genomic: CTTCGGAGGAATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtcagctctc ... actgcaacagGAGGACACATCAACCCAGCTGTGACTTTCGGGCTGTTCTTAGCCAGGAAGC
EST: CTTCGGAGGAATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG GAGGACACATCAACCCAGCTGTGACTTTCGGGCTGTTCTTAGCCAGGAAGCEST: gi|211307685|gb|FK967576.1|FK967576
genomic: CTTCGGAGGAATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtcagctctc ... actgcaacagGAGGACACATCAACCCAGCTGTGACTTTCGGGCTGTTCTTAGCCAGGAAGC
EST: CTTCGGAGGAATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG GAGGACACATCAACCCAGCTGTGACTTTCGGGCTGTTCTTAGCCAGGAAGCEST: gi|29130886|gb|CB381590.1|CB381590
genomic: CTTCGGAGGAATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtcagctctc ... actgcaacagGAGGACACATCAACCCAGCTGTGACTTTCGGGCTGTTCTTAGCCAGGAAGC
EST: CTTCGGAGGAATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG GAGGACACATCAACCCAGCTGTGACTTTCGGGCTGTTCTTAGCCAGGAAGCEST: gi|148982069|gb|EE028110.2|EE028110
genomic: CTTCGGAGGAATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtcagctctc ... actgcaacagGAGGACACATCAACCCAGCTGTGACTTTCGGGCTGTTCTTAGCCAGGAAGC
EST: CTTCGGAGGAATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG GAGGACACATCAACCCAGCTGTGACTTTCGGGCTGTTCTTAGCCAGGAAGCEST: gi|148970221|gb|EE021158.2|EE021158
genomic: CTTCGGAGGAATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtcagctctc ... actgcaacagGAGGACACATCAACCCAGCTGTGACTTTCGGGCTGTTCTTAGCCAGGAAGC
EST: CTTCGGAGGAATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG GAGGACACATCAACCCAGCTGTGACTTTCGGGCTGTTCTTAGCCAGGAAGCEST: gi|26558811|gb|CA831046.1|CA831046
genomic: CTTCGGAGGAATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtcagctctc ... actgcaacagGAGGACACATCAACCCAGCTGTGACTTTCGGGCTGTTCTTAGCCAGGAAGC
EST: CTTCGGAGGAATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG GAGGACACATCAACCCAGCTGTGACTTTCGGGCTGTTCTTAGCCAGGAAGCEST: gi|149046894|gb|EE048104.2|EE048104
genomic: CTTCGGAGGAATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtcagctctc ... actgcaacagGAGGACACATCAACCCAGCTGTGACTTTCGGGCTGTTCTTAGCCAGGAAGC
EST: CTTCGGAGGAATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG GAGGACACATCAACCCAGCTGTGACTTTCGGGCTGTTCTTAGCCAGGAAGCEST: gi|20208110|gb|BQ134214.1|BQ134214
genomic: CTTCGGAGGAATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtcagctctc ... actgcaacagGAGGACACATCAACCCAGCTGTGACTTTCGGGCTGTTCTTAGCCAGGAAGC
EST: CTTCGGAGGAATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG GAGGACACATCAACCCAGCTGTGACTTTCGGGCTGTTCTTAGCCAGGAAGCEST: gi|149094855|gb|EE180429.2|EE180429
genomic: CTTCGGAGGAATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtcagctctc ... actgcaacagGAGGACACATCAACCCAGCTGTGACTTTCGGGCTGTTCTTAGCCAGGAAGC
EST: CTTCGGAGGAATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG GAGGACACATCAACCCAGCTGTGACTTTCGGGCTGTTCTTAGCCAGGAAGCEST: gi|9254382|gb|BE344850.1|BE344850
genomic: CTTCGGAGGAATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtcagctctc ... actgcaacagGAGGACACATCAACCCAGCTGTGACTTTCGGGCTGTTCTTAGCCAGGAAGC
EST: CTTCGGAGGAATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG GAGGACACATCAACCCAGCTGTGACTTTCGGGCTGTTCTTAGCCAGGAAGCEST: gi|148937476|gb|EC881659.2|EC881659
genomic: CTTCGGAGGAATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtcagctctc ... actgcaacagGAGGACACATCAACCCAGCTGTGACTTTCGGGCTGTTCTTAGCCAGGAAGC
EST: CTTCGGAGGAATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG GAGGACACATCAACCCAGCTGTGACTTTCGGGCTGTTCTTAGCCAGGAAGCEST: gi|26456257|gb|CA827840.1|CA827840
genomic: CTTCGGAGGAATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtcagctctc ... actgcaacagGAGGACACATCAACCCAGCTGTGACTTTCGGGCTGTTCTTAGCCAGGAAGC
EST: CTTCGGAGGAATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG GAGGACACATCAACCCAGCTGTGACTTTCGGGCTGTTCTTAGCCAGGAAGCEST: gi|148954456|gb|EC899880.2|EC899880
genomic: CTTCGGAGGAATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtcagctctc ... actgcaacagGAGGACACATCAACCCAGCTGTGACTTTCGGGCTGTTCTTAGCCAGGAAGC
EST: CTTCGGAGGAATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG GAGGACACATCAACCCAGCTGTGACTTTCGGGCTGTTCTTAGCCAGGAAGC
genomic: CTTCGGAGGAATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtcagctctc ... actgcaacagGAGGACACATCAACCCAGCTGTGACTTTCGGGCTGTTCTTAGCCAGGAAGC
cacaactacaacaaccaaagacaccactaatggttgttacctgctactgcaacagGAGGACACATCAACCCAGCTGTGACTTTCGGGCTGTTCTTAGCCAGGAAGCTGTCCCTGACTAGGGCCCTCTTCTACATCATCATGCAATGCCTGGGTGC
cactaat putative branch site (score: 726)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaactgtgaaagaatccatgcaattcagcaagcatagaccaagaacacaactacaacaaccaaagacaccactaatggttgttacctgctactgcaacagGAGGACACATCAACCCAGCTGTGACTTTCGGGCTGTTCTTAGCCAGGAAGCTGTCCCTGACTAGGGCCCTCTTCTACATCATCATGCAATGCCTGGGTGC
- - - - - - - tccatgc
- - - - - - - - - - - - - -gcaagca
- - - - - - - - - - - - - - - - - - - - aagaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - -caacaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caccact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tacctgc