1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgctctattatgggcttatggcataggtctttcttgtttgtcaccaagatgattgtttattgtttctctcactgtgctaactcatctatgttaatttcagACCGAGTGGACAAGGGAGGAGGATGAGAAATTACTTCATCTTGCTAAACTCATGCCTACTCAGTGGAGGACAATTGCACCTATTGTAGGTCGAACACCAT
species | Zea mays |
transcript | AC203535.4_FGT001 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAGTGGCTCGATCCGTCCATC-AGAAAG ACCGAGTGGACAAGGGAGGAGGATGAGAAATTACTTCATCTTGCTAAACTEST: gi|33095816|gb|CF055810.1|CF055810
genomic: GAGTGGCTCGATCCGTCCATCAAG-AAGgtaaccgact ... ttaatttcagACCGAGTGGACAAGGGAGGAGGATGAGAAATTACTTCATCTTGCTAAACT
EST: AGCAGTGCAAGGCCCGCTGGTACGAGTGGCTCGATCCGTCCATCAAGAAG ACCGAGTGGACAAGGGAGGAGGATGAGAAATTACTTCATCTTGCTAAACTC
genomic: AGCAGTGCAAGGCCCGCTGGTATGAGTGGCTCGATCCGTCCATCAAGAAGgtaaccgact ... ttaatttcagACCGAGTGGACAAGGGAGGAGGATGAGAAATTACTTCATCTTGCTAAACTC
aagatgattgtttattgtttctctcactgtgctaactcatctatgttaatttcagACCGAGTGGACAAGGGAGGAGGATGAGAAATTACTTCATCTTGCTAAACTCATGCCTACTCAGTGGAGGACAATTGCACCTATTGTAGGTCGAACACCAT
attgtttattgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgctctattatgggcttatggcataggtctttcttgtttgtcaccaagatgattgtttattgtttctctcactgtgctaactcatctatgttaatttcagACCGAGTGGACAAGGGAGGAGGATGAGAAATTACTTCATCTTGCTAAACTCATGCCTACTCAGTGGAGGACAATTGCACCTATTGTAGGTCGAACACCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - -gcttatg
- - - - - - - - - - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - atgattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgcta