1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ccgtgggctgcgcccgtgctggagctacgcgctagggttagcagccggctcgtgtttccgatttccgtactgatgcgtgcttccgcctctcgctttcaagGATCCGAGGCCGCGGAGGTCGGGCCAGGCCGTCAAGGAGAGCATGGACGACTTCTTGCTCGAGGACGAGGAGGTGCTCGCGCAG
species | Zea mays |
transcript | AC194264.3_FGT006 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
cggctcgtgtttccgatttccgtactgatgcgtgcttccgcctctcgctttcaagGATCCGAGGCCGCGGAGGTCGGGCCAGGCCGTCAAGGAGAGCATGGACGACTTCTTGCTCGAGGACGAGGAGGTGCTCGCGCAG
tactgat putative branch site (score: 43)
cttccgcctctcgctt putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccgtgggctgcgcccgtgctggagctacgcgctagggttagcagccggctcgtgtttccgatttccgtactgatgcgtgcttccgcctctcgctttcaagGATCCGAGGCCGCGGAGGTCGGGCCAGGCCGTCAAGGAGAGCATGGACGACTTCTTGCTCGAGGACGAGGAGGTGCTCGCGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - gggctgc
- - - - - - - cgtgctg
- - - - - - - - - - - - - - - - - - - - gcagccg
- - - - - - - - - - - - - - - - - - - - - - - -gctcgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgatgc