Sequence
atgc intronic sequence ATGC exonic sequencegtatcaatcagtgaacccccatctgctgcttcactataccccctctttacactcactgtgaagtacatcaaccctttgcatctatgcttatttgctttgctattagGATTGGATGCACTTCAGTGTTGCCTTCTGGCACACGTTCTGTGGTACTGGCACTGATCCTTTTGGTGCTCCTACAAAGACTTGGCCTTGGGAGGATGGCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AC190975.3_FGT004 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os07g47290.1 (Oryza sativa), 3'ss of exon 4
---gtatcaatcagtgaacccccatctgctgcttcactataccccctctttacactcactgtgaagtacatcaaccctttgcatctatgcttatttgctttgctattagGATTGGATGCACTTCAGTGTTGCCTTCTGGCACACGTTCTGTGGTACTGGCACTGATCCTTTTGGTGCTCCTACAAAGACTTGGCCTTGGGAGGATGGCA
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gtagggtttatgaattatgtcttgttgaacagatccttttattcccttttg-----cgtcatggaatacatctgagttttgtattt-----tatctgctt-gcgtttagGATTGGATGCGGTTCAGCGTGGCCTTTTGGCATACGTTCCGTGGTACTGGAGGAGATCCTTTTGGTGCCCCTACAAAGTCTTGGCCTTGGGAGGATGGCA
upper sequence: AC190975.3_FGT004 (Zea mays), 3'ss of exon 1
lower sequence: AT5G57655.1 (Arabidopsis thaliana), 3'ss of exon 3
------gtatcaatcagtgaacccccatctgctgct-tcactataccccctctttacactcactgtgaagtacatcaaccctttgcatctatgcttatttgctttgctattagGATTGGATGCACTTCAGTGTTGCCTTCTGGCACACGTTCTGTGGTACTGGCACTGATCCTTTTGGTGCTCCTACAAAGACTTGGCCTTGGGAGGATGGCA
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gtacttttattttcttgtttgtattttcttgcaacaatttttgagttatgtttttatggatttgaagaaacgtgtgggatgtttg--tttgttgtcctgaattttttgaacagGATTGGTTTAGATTCAGTGTTGCGTTTTGGCATACTTTCCGTGGGACTGGAGGTGATCCATTTGGTGCTGCTACTAAGTATTGGCCTTGGGAAGATGGTA
upper sequence: AC190975.3_FGT004 (Zea mays), 3'ss of exon 1
lower sequence: Vv11s0052g01710.t01 (Vitis vinifera), 3'ss of exon 5
--------gtatcaatcagtgaacccccatctgctgcttcactataccccctctttacactcactgtgaagtacatcaaccct-ttgcatctatgcttat--ttgctt-tgctattagGATTGGATGCACTTCAGTGTTGCCTTCTGGCACACGTTCTGTGGTACTGGCACTGATCCTTTTGGTGCTCCTACAAAGACTTGGCCTTGGGAGGATGGCA
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gttggtttcttttcttttcttttcttttcttttctttttttttttcttttttttttttgcctcagatttattttatcaactaaattgcaattaccaataaagttgttaatgtcaatagGATTGGATGAGATTCAGTGTTGCATTTTGGCACACATTCCGTGGAACCGGAGGTGATCCATTTGGTGCACCTACAAAGTTTTGGCCATGGGAAGATGGTA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctcactgtgaagtacatcaaccctttgcatctatgcttatttgctttgctattagGATTGGATGCACTTCAGTGTTGCCTTCTGGCACACGTTCTGTGGTACTGGCACTGATCCTTTTGGTGCTCCTACAAAGACTTGGCCTTGGGAGGATGGCA
cactcac putative branch site (score: 2)
tttgcttt putative PPT
ttattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatcaatcagtgaacccccatctgctgcttcactataccccctctttacactcactgtgaagtacatcaaccctttgcatctatgcttatttgctttgctattagGATTGGATGCACTTCAGTGTTGCCTTCTGGCACACGTTCTGTGGTACTGGCACTGATCCTTTTGGTGCTCCTACAAAGACTTGGCCTTGGGAGGATGGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG