1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...agggcccatcggatacagtttttgacagtgccgtgtgtttggttgcttgaacaaatgtttgagccaggtcacgctcgtgcaaaataaccatctcatccagGCCCATCACAAACGGCCAAAATCTCCGTTTCTCCAGAGCCAGGCTCCACTCGCTCCCTGTCCTCGCAGCTCAGAGCACGCGCAGGCCCCTTCCCTGTGTC
species | Zea mays |
transcript | AC186604.4_FGT003 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
cttgaacaaatgtttgagccaggtcacgctcgtgcaaaataaccatctcatccagGCCCATCACAAACGGCCAAAATCTCCGTTTCTCCAGAGCCAGGCTCCACTCGCTCCCTGTCCTCGCAGCTCAGAGCACGCGCAGGCCCCTTCCCTGTGTC
aaataac putative branch site (score: 2)
tctcatcc putative PPT
aaaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agggcccatcggatacagtttttgacagtgccgtgtgtttggttgcttgaacaaatgtttgagccaggtcacgctcgtgcaaaataaccatctcatccagGCCCATCACAAACGGCCAAAATCTCCGTTTCTCCAGAGCCAGGCTCCACTCGCTCCCTGTCCTCGCAGCTCAGAGCACGCGCAGGCCCCTTCCCTGTGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - -gtttttg
- - - - - - - - - - - - - - - - -tgtgttt
- - - - - - - - - - - - - - - - - - - - - -tgcttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - atgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataa