1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tcagaacaagtgtgctgtgatgctacattgcaatgtgacccctcttgtttagtaagggcatgcaatgatctgatgattctattttatttatttgttccagGACAAGGGTAGTACAGAGATTAATAGAGAAAGTTACGAGCAGAGAGCTGATTATACTCATTATTTCAGCCCTACAGCCAGGTTTCATGCTACTTGTCAAT
species | Zea mays |
transcript | AC166636.1_FGT009 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
tgtttagtaagggcatgcaatgatctgatgattctattttatttatttgttccagGACAAGGGTAGTACAGAGATTAATAGAGAAAGTTACGAGCAGAGAGCTGATTATACTCATTATTTCAGCCCTACAGCCAGGTTTCATGCTACTTGTCAAT
atctgat putative branch site (score: 38)
tttgttcc putative PPT
atgattctattttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcagaacaagtgtgctgtgatgctacattgcaatgtgacccctcttgtttagtaagggcatgcaatgatctgatgattctattttatttatttgttccagGACAAGGGTAGTACAGAGATTAATAGAGAAAGTTACGAGCAGAGAGCTGATTATACTCATTATTTCAGCCCTACAGCCAGGTTTCATGCTACTTGTCAAT
- -gaacaag
- - - - - tgtgctg
- - - - - - - - -tgatgct
- - - - - - - - - - - - -cattgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ggcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgat