1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gtcttgcaattctttatgatttgatactcagggtccttcaggttccagcggattctgcagtatacaaatatttatatatgtttttttctaaaaaatgcagTGCAATGGGGAAAATTGATATGTCTACTGACGAAGAATCAGATTGTGTAGCTATATGTCCACCTAACAGAAATGCTGGTCACGAGGAAGTTGTGAGTGGC
species | Zea mays |
transcript | AC148167.6_FGT001 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTGGGATCTGCCCGGCAAGGTGGCCGGGAACAT TGCAATGGGGAAAATTGATATGTCTACTGACGAAGAATCAGATTGTGTAGCEST: gi|149099639|gb|EE185684.2|EE185684
genomic: CTGGGATCTGCCCGGCAAGGTGGCCGGGAACATgtaatggcgt ... aaaaatgcagTGCAATGGGGAAAATTGATATGTCTACTGACGAAGAATCAGATTGTGTAGC
EST: GCCGCGGCGAGGCGGCGCTGGGATCTGCCCGGCAAGGTGGCCGGGAACAT TGCAATGGGGAAAATTGATATGTCTACTGACGAAGAATCAGATTGTGTAGCEST: gi|149097420|gb|EE183276.2|EE183276
genomic: GCCGCGGCGAGGCGGCGCTGGGATCTGCCCGGCAAGGTGGCCGGGAACATgtaatggcgt ... aaaaatgcagTGCAATGGGGAAAATTGATATGTCTACTGACGAAGAATCAGATTGTGTAGC
EST: GCCGCGGCGAGGCGGCGCTGGGATCTGCCCGGCAAGGTGGCCGGGAACAT TGCAATGGGGAAAATTGATATGTCTACTGACGAAGAATCAGATTGTGTAGCEST: gi|148968362|gb|EE019509.2|EE019509
genomic: GCCGCGGCGAGGCGGCGCTGGGATCTGCCCGGCAAGGTGGCCGGGAACATgtaatggcgt ... aaaaatgcagTGCAATGGGGAAAATTGATATGTCTACTGACGAAGAATCAGATTGTGTAGC
EST: GCCGCGGCGAGGCGGCGCTGGGATCTGCCCGGCAAGGTGGCCGGGAACAT TGCAATGGGGAAAATTGATATGTCTACTGACGAAGAATCAGATTGTGTAGCEST: gi|148929700|gb|EC876422.2|EC876422
genomic: GCCGCGGCGAGGCGGCGCTGGGATCTGCCCGGCAAGGTGGCCGGGAACATgtaatggcgt ... aaaaatgcagTGCAATGGGGAAAATTGATATGTCTACTGACGAAGAATCAGATTGTGTAGC
EST: GCCGCGGCGAGGCGGCGCTGGGATCTGCCCGGCAAGGTGGCCGGGAACAT TGCAATGGGGAAAATTGATATGTCTACTGACGAAGAATCAGATTGTGTAGC
genomic: GCCGCGGCGAGGCGGCGCTGGGATCTGCCCGGCAAGGTGGCCGGGAACATgtaatggcgt ... aaaaatgcagTGCAATGGGGAAAATTGATATGTCTACTGACGAAGAATCAGATTGTGTAGC
cagcggattctgcagtatacaaatatttatatatgtttttttctaaaaaatgcagTGCAATGGGGAAAATTGATATGTCTACTGACGAAGAATCAGATTGTGTAGCTATATGTCCACCTAACAGAAATGCTGGTCACGAGGAAGTTGTGAGTGGC
ttctaaa putative branch site (score: 326)
agtatacaaatattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcttgcaattctttatgatttgatactcagggtccttcaggttccagcggattctgcagtatacaaatatttatatatgtttttttctaaaaaatgcagTGCAATGGGGAAAATTGATATGTCTACTGACGAAGAATCAGATTGTGTAGCTATATGTCCACCTAACAGAAATGCTGGTCACGAGGAAGTTGTGAGTGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
-tcttgca
- - - - - - - - tgatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - -tctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atacaaa