1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...agattgccttttcactaagaaatctaaattctatatttattgtgcatataatgctagttgatttacacgtatgtgagcataaggctatgtatttctgcagATGGTGATGGCCGTGTTTGCTTACATCTACCACCAGTCATTTGTTGTTCCTCAAAGCTATTCGGTTGAGATGATTTTGAACCAG
species | Vitis vinifera |
transcript | Vv19s0090g01220.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GAGATAGTATTCCTGGACATGGTGGAATTACAGACAGAATGGATTGTCAG ATGGTGATGGCCGTGTTTGCTTACATCTACCACCAGTCATTTGTTGTTCCC
genomic: GAGATAGTATTCCTGGACATGGTGGAATTACAGACAGAATGGATTGTCAGgtaagataga ... atttctgcagATGGTGATGGCCGTGTTTGCTTACATCTACCACCAGTCATTTGTTGTTCC-
atataatgctagttgatttacacgtatgtgagcataaggctatgtatttctgcagATGGTGATGGCCGTGTTTGCTTACATCTACCACCAGTCATTTGTTGTTCCTCAAAGCTATTCGGTTGAGATGATTTTGAACCAG
agttgat putative branch site (score: 5)
tatttct putative PPT
tatgtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agattgccttttcactaagaaatctaaattctatatttattgtgcatataatgctagttgatttacacgtatgtgagcataaggctatgtatttctgcagATGGTGATGGCCGTGTTTGCTTACATCTACCACCAGTCATTTGTTGTTCCTCAAAGCTATTCGGTTGAGATGATTTTGAACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
-gattgcc
- - - - - - - - aagaaat
- - - - - - - - - - - - - - - - - - - - -gtgcata
- - - - - - - - - - - - - - - - - - - - - - - - - atgctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctatgt