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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaagttttactgtgaagaaaatattattcatatttcttgatcctctagatgctgattttttgccttgatatatgaagaaaaaaacatgcgcaaggatcaatctgactgacttctattaattatcatgtcttagGCTGCAAATCCTGGATCTATTTTAGAAGATTTTGTGAGATGGCATTCACCGCCTGATTGGACTGATACTGAGCCTAGTGATGAGTTTAAAGACACCTTTG

Basic information

species Vitis vinifera
transcript Vv19s0090g00690.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0090g00690.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA14G02550.1 (Glycine max), 3'ss of exon 9
gtgaagttttactgtgaagaaaatattattcatatttcttgatcctctagatgctgattttttgccttgatatatgaagaaaaaaacatgcgcaaggatcaatctgactgacttctattaattatcatgtcttagGCTGCAAATCCTGGATCTATTTTAGAAGATTTTGTGAGATGGCATTCACCGCCTGATTGGACTGATACTGAGCCTAGTGATGAGTTTAAAGACACCTTTG
|| | |   | |  |||||  ||  |   | |       ||||  | |  |||||    | || |  || |  |||            |||  || | ||  ||||| | | || | ||  ||||||| | |||||||||||||||||||| |||||| || |||||||| |||||||| || || ||||||||||| |||| |||  | |||   |||  ||  ||    ||||
gtaaggggctcccttgaagggaacttctcttac------tgatattgtgaatgct----tcttactatgttgaatg------------tgcctaatgttctgtctgagttagttttgtttgttatcatattttagGCTGCAAATCCTGGATGTATTTTGGAGGATTTTGTAAGATGGCACTCTCCTCCTGATTGGACAGATAATGAAGCAAGTACAGAGGATAGTGATGTTTTTG

upper sequence: Vv19s0090g00690.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA18G10700.1 (Glycine max), 3'ss of exon 3
gtgaagttttactgtgaagaaaatattattcatatttcttgatcctctagatgctgattttttgccttgatatatgaagaaaaaaacatgcgcaaggatcaatctgactgacttctattaattatcatgtcttagGCTGCAAATCCTGGATCTATTTTAGAAGATTTTGTGAGATGGCATTCACCGCCTGATTGGACTGATACTGAGCCTAGTGATGAGTTTAAAGACACCTTTG
|| |  |||| |  |||||| ||  ||  | |       ||||  |||  |||||           |||| ||      ||          | |  |||   |||  || | |||| ||  |  |||||| |||||||||||||||||| |  ||||| |||||||||||||||||| | || || ||||||||||  || | ||||   |||  |||    | |||  | ||| 
gtcagattttcccttgaagagaacttttcttac------tgatattcttaatgct----------tttgaaatgcatctaa---------tgtagtgat-gttctctctaagttctgtttgtggtcatgttttagGCTGCAAATCCTGGTTGCATTTTGGAAGATTTTGTGAGATGGTACTCGCCTCCTGATTGGATGGAAAGTGAGGGAAGTACTGAAGACAGAGATTCTTTTT

upper sequence: Vv19s0090g00690.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA08G43140.1 (Glycine max), 3'ss of exon 8
gtgaagttttactgtgaagaaaatattattcatatttcttgatcctctagatgctgattttttgccttgatatatgaagaaaaaaacatgcgcaaggatcaatctgactgacttctattaattatcatgtcttagGCTGCAAATCCTGGATCTATTTTAGAAGATTTTGTGAGATGGCATTCACCGCCTGATTGGACTGATACTGAGCCTAGTGATGAGTTTAAAGACACCTTTG
|| |  |||| |  |||||| ||  ||  | |       ||||  |||  ||     | |||||   ||  || | | | |          |  | | || |||| | | | |||| ||     |||||  |||||||||||||||||| |  ||||| |||||||||||||||||| | || || |||||||||| ||| | ||||   |||  ||||  || |||  | | | 
gtcagattttcccttgaagagaacttttcttac------tgatattcttaat-----tcttttggaatg-catctaatgta----------gtgatgctctatctaagttagttctgttttgcctcatgatttagGCTGCAAATCCTGGTTGCATTTTGGAAGATTTTGTGAGATGGTACTCTCCTCCTGATTGGAGTGAAAGTGAGGGAAGTACTGAGGATAGAGATTCTTCTT

upper sequence: Vv19s0090g00690.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA02G46190.1 (Glycine max), 3'ss of exon 9
gtgaagttttactgtgaagaaaatattattcatatttcttgatcctctagatgctgattttttgccttgatatatgaagaaaaaaacatgcgcaaggatcaatctgactgacttctattaattatcatgtcttagGCTGCAAATCCTGGATCTATTTTAGAAGATTTTGTGAGATGGCATTCACCGCCTGATTGGACTGATACTGAGCCTAGTGATGAGTTTAAAGACACCTTTG
|| | | | | |   ||||  ||  ||  | |       |||   | |  |||||    | || |  || |  |||            |||  || | ||| ||||| | | |||| |   |||| || | |||||||||||||||||||| ||| || || |||||||| |||||| | || || ||||||||||| |||| |||  | |||   |||  ||  ||    ||||
gtaaggctctccctggaagggaacttttcttac------tgacattgtgaatgct----tcttactatgttgaatg------------tgcctaatgttcagtctgagttagttctgtatgttatgatattttagGCTGCAAATCCTGGATGTATCTTGGAGGATTTTGTAAGATGGTACTCTCCTCCTGATTGGACAGATAATGAAGCAAGTACAGAGGATAGTGATGTTTTTG

upper sequence: Vv19s0090g00690.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT5G55060.1 (Arabidopsis thaliana), 3'ss of exon 9
gtgaagttttactgtgaagaaaatattattcatatttcttgatcctctagatgctgattttttgccttgatatatgaagaaaaaaacatgcgcaaggatcaatctgactgacttctattaattatcatgtcttagGCTGCAAATCCTGGATCTATTTTAGAAGATTTTGTGAGATGGCATTCACCGCCTGATTGGACTGATACTGAGCCTAGTGATGAGTTTAAAGACACCTTTG------
                       |  |  || || |   | ||| | |   || |   | | |        || | | |||| |||     ||    || ||  ||| | |  ||| |   |     ||| |||||| ||||||||||| | |||||| |||||||||||||||||||| || || || || |||||||| | ||      || |   || |  |||   || |       
----------------------gtgatcatcttaatgaataatcttattactgtttggtatataagcactcatgtaaggaaagaaattgtagctgatatgaaattga-taagatctgtacctc----tgtattagGCAGCAAATCCTGGCTGTATTTTGGAAGATTTTGTGAGATGGCACTCGCCACCAGACTGGACTGAAAATG------GTAACATGTCTGGAGATGACTCTTCACCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaaaacatgcgcaaggatcaatctgactgacttctattaattatcatgtcttagGCTGCAAATCCTGGATCTATTTTAGAAGATTTTGTGAGATGGCATTCACCGCCTGATTGGACTGATACTGAGCCTAGTGATGAGTTTAAAGACACCTTTG
                                   tattaat  putative branch site (score: 2)
                                ttctattaattatcat  TA-rich tract