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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttcagggttactacactcatttggtttgtggaatgtaattgtattaatcatcaatatataaccagtttgagcaaagaatatggatcttagtgttacctttcatgctaccagATCGGAACGGATATTGAAGATTTTAAGTGCTCTTGGTTGGTTGTGAAAGCACTAGAGATTTGTAATGAGGAACAGAAAAAAACCTTATAT

Basic information

species Vitis vinifera
transcript Vv19s0015g01010.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0015g01010.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA15G12780.1 (Glycine max), 3'ss of exon 9
gtaagtttcagggttactacactcatttggtttgtggaatgtaattgtatta-atcatcaatatataaccagtttgagcaaagaatatggatcttagtgttacctttcatgctaccagATCGGAACGGATATTGAAGATTTTAAGTGCTCTTGGTTGGTTGTGAAAGCACTAGAGATTTGTAATGAGGAACAGAAAAAAACCTTATAT
                                        || |   |  |  || ||   | |  || ||  |  |        ||    ||| | | ||    | ||||  ||||||| || || |||||||||||||| |||||||||||||| |||||||||||  | ||  || |||||||  |||| || |||    || | 
----------------------------------------gtgagcattctggataatgcgtttggaaaca--tcaatttctctttac---tctcattcttgttatccatgggaccagATAGGTACAGATATTGAAGATTTCAAGTGCTCTTGGTTAGTTGTGAAAGCCTTGGAACTTAGTAATGAACAACAAAAGAAAGTTCTACAC

upper sequence: Vv19s0015g01010.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA09G01820.3 (Glycine max), 3'ss of exon 9
gtaagtttcagggttactacactcatttggtttgtggaatgtaattgtatta-atcatcaatatataaccagtttgagcaaagaatatggatcttagtgttacctttcatgctaccagATCGGAACGGATATTGAAGATTTTAAGTGCTCTTGGTTGGTTGTGAAAGCACTAGAGATTTGTAATGAGGAACAGAAAAAAACCTTATAT
                                        || |   |  |  || ||  || |  || ||  |  |        ||   |||| | | ||  | | ||||  ||||||| || || |||||||||||||| ||||||||||||||  ||||||||||  | ||  || |||||||  |||| || |||    || | 
----------------------------------------gtgagcattctggataatggatttggaaaca--tcaatttctcttta---atctcattcttgtcatccatgggaccagATAGGTACAGATATTGAAGATTTCAAGTGCTCTTGGTTAATTGTGAAAGCCTTGGAACTTAGTAATGAACAACAAAAGAAAGTTCTACAA

upper sequence: Vv19s0015g01010.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA04G34770.1 (Glycine max), 3'ss of exon 2
gtaagtttcagggttactacactcatttggtttgtggaatgtaattgtatta-atcatcaatatataaccagtttgagcaaagaatatggatcttagtgttacctttcatgctaccagATCGGAACGGATATTGAAGATTTTAAGTGCTCTTGGTTGGTTGTGAAAGCACTAGAGATTTGTAATGAGGAACAGAAAAAAACCTTATAT
                                        || |   |  |  || ||  || |  || ||  |  |        ||   || | | | ||  | | ||||  ||||||| || || |||||||||||||| |||||||| |||||  ||||||||||  | ||  || |||||||  |||| || |||    || | 
----------------------------------------gtgagcattctggataatggatttggaaaca--tcaatttctcttta---atttgattcttgtcatccatgggaccagATAGGTACAGATATTGAAGATTTCAAGTGCTCGTGGTTAATTGTGAAAGCCGTGGAACTTAGTAATGAACAACAAAAGAAAGTTCTACAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110702878|gb|EE079232.1|EE079232
EST:     GATGATTATCTGGATTGTTTCGGTGACCCCCAAGTGATTGGTAAG                         ATAGGAACGGATATTGAAGATTTTAAGTGCTCTTGGTTGGTTGTGAAAGCA
genomic: GATGATTATCTGGATTGTTTCGGTGACCCCCAAGTGATTGGTAAGgtaagtttca ... atgctaccagATCGGAACGGATATTGAAGATTTTAAGTGCTCTTGGTTGGTTGTGAAAGCA
EST: gi|110396453|gb|EC962139.1|EC962139
EST:     GATGATTATCTGGATTGTTTCGGTTACCCCCAAGTGATTGGTAAG                         ATCGGAACGGATATTGAAGATTTTAAGTGCTCTTGGTTGGTTGTGAAAGCA
genomic: GATGATTATCTGGATTGTTTCGGTGACCCCCAAGTGATTGGTAAGgtaagtttca ... atgctaccagATCGGAACGGATATTGAAGATTTTAAGTGCTCTTGGTTGGTTGTGAAAGCA
EST: gi|22013972|gb|BQ799006.1|BQ799006
EST:     GATGATTATCTGGATTGTTTCGGTGACCCCCAAGTGATTGGTAAG                         ATCGGAACGGATATTGAAGATTTTAAGTGCTCTTGGTTGGTTGTGAAAACA
genomic: GATGATTATCTGGATTGTTTCGGTGACCCCCAAGTGATTGGTAAGgtaagtttca ... atgctaccagATCGGAACGGATATTGAAGATTTTAAGTGCTCTTGGTTGGTTGTGAAAGCA
EST: gi|110698392|gb|EE075834.1|EE075834
EST:     GATGATTATCTGGGATTGTTTCGGTGACCCCCAAGTGATTGGTAAG                         ATAGGAACGGATATTGAAGATTTTAAGTGCTTCTGGGT-GGTTGTGAA-GC
genomic: GATGATTATCTGG-ATTGTTTCGGTGACCCCCAAGTGATTGGTAAGgtaagtttca ... atgctaccagATCGGAACGGATATTGAAGATTTTAAGTGCT-CTTGGTTGGTTGTGAAAGC
EST: gi|110375001|gb|EC939952.1|EC939952
EST:     GATGATTATCTGGATTGTTTCGGTGACCCCCAAGTGATTGGTAAG                         ATCGGAACGGATATTGAAGATTTTAAGTGCTCTTGGTTGGTTGTGAAAACA
genomic: GATGATTATCTGGATTGTTTCGGTGACCCCCAAGTGATTGGTAAGgtaagtttca ... atgctaccagATCGGAACGGATATTGAAGATTTTAAGTGCTCTTGGTTGGTTGTGAAAGCA
EST: gi|30128757|gb|CB914096.1|CB914096
EST:     GATGATTATCTGGATTGTTTCGGTGACCCCCAAGTGATTGGTAAG                         ATCGGAACGGATATTGAAGATTTTAAGTGCTCTTGGTTGGTTGTGAAAGCA
genomic: GATGATTATCTGGATTGTTTCGGTGACCCCCAAGTGATTGGTAAGgtaagtttca ... atgctaccagATCGGAACGGATATTGAAGATTTTAAGTGCTCTTGGTTGGTTGTGAAAGCA
EST: gi|110687343|gb|EE064671.1|EE064671
EST:     GATGATTATCTGGATTGTTTCGGTGACCCCCAAGTGATTGGTAAG                         ATCGGAACGGATATTGAA
genomic: GATGATTATCTGGATTGTTTCGGTGACCCCCAAGTGATTGGTAAGgtaagtttca ... atgctaccagATCGGAACGGATATTGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tataaccagtttgagcaaagaatatggatcttagtgttacctttcatgctaccagATCGGAACGGATATTGAAGATTTTAAGTGCTCTTGGTTGGTTGTGAAAGCACTAGAGATTTGTAATGAGGAACAGAAAAAAACCTTATAT
 atataac  putative branch site (score: 3)
                                       cctttcat  putative PPT
                aaagaatat  TA-rich tract