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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtctgaggcttgctattttatagtgctcatttggaggatcttctgacttagatatgttttgcagAAACCAGAAATAGTTACTTCCAGTCGTAAATATCGTGTACGGGTACTGGTATGTGCTCCATCAAATTCTGCGCTTGATGAGATTGTGTTGCGCCTTCTAA

Basic information

species Vitis vinifera
transcript Vv19s0015g00460.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0015g00460.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA05G25210.1 (Glycine max), 3'ss of exon 13
gtaagtctgaggcttgctattttatagtgctcatttggaggatcttctgacttagatatgttttg-cagAAACCAGAAATAGTTACTTCCAGTCGTAAATATCGTGTACGGGTACTGGTATGTGCTCCATCAAATTCTGCGCTTGATGAGATTGTGTTGCGCCTTCTAA
       | |   ||| |  |||    |||  | |   |  |||||||    | |||  || ||  |||||||| |||    | ||||| | |||||| ||||||||| | || || ||||| || |||||||| ||||| |||||||||||||||||| |  || | |
------gttaaaattgttgattt----tgcaaaat---aatatcttctctaat-gatgggtattatcagAAACCTGAAGCTCTAACTTCAAATCGTAAGTATCGTGTAAGAGTGCTAGTATGCGCCCCATCAAACTCTGCCCTTGATGAGATTGTGTTGAGGGTTTTCA

upper sequence: Vv19s0015g00460.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA08G08230.1 (Glycine max), 3'ss of exon 11
gtaagtctgaggcttgctattttatagtgctcatttgg----aggatcttctgactta-gatatgttttg-cagAAACCAGAAATAGTTACTTCCAGTCGTAAATATCGTGTACGGGTACTGGTATGTGCTCCATCAAATTCTGCGCTTGATGAGATTGTGTTGCGCCTTCTAA
||||||       | | |   | | | || | |||| |    |  || |  |  || | |||  |||||  |||||||| |||    | ||||| | ||| || ||||||||| | ||  | ||||| || |||||||| ||||| |||||||||||||||||| |  || | |
gtaagtacttt-ttcgttggctaaaattgttgattttgcaaaataatatcttctctaatgatgggttttatcagAAACCTGAAGCTATAACTTCAAATCGCAAGTATCGTGTAAGAGTGTTAGTATGCGCCCCATCAAACTCTGCCCTTGATGAGATTGTGTTGAGGGTTTTCA

upper sequence: Vv19s0015g00460.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT4G15570.1 (Arabidopsis thaliana), 3'ss of exon 10
--------------------------------gtaagtctgaggcttgctattttatagtgctcatttggaggatcttctgacttagatatgttttgcagAAACCAGAAATAGTTACTTCCAGTCGTAAATATCGTGTACGGGTACTGGTATGTGCTCCATCAAATTCTGCGCTTGATGAGATTGTGTTGCGCCTTCTAA
                                ||||  |      |   | ||||||  |  |  |        | |||||| |    | || | | |||||||| ||  | |||| | | ||||| || ||  |  |||| ||||| || |||||||||||||| ||||| |||||||||||||||||||| ||||| |
gtaagtcggaagattttattctgagacaaatggtaaccccacatttatttcttttatcata-tagtaaccccacttttctgattctcttttgatgttcagAAACCGGAGGTGGTTAATGCGAGTCGGAAGTACAGATTACGTGTACTTGTCTGTGCTCCATCAAACTCTGCACTTGATGAGATTGTGTTGCGGCTTCTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgctattttatagtgctcatttggaggatcttctgacttagatatgttttgcagAAACCAGAAATAGTTACTTCCAGTCGTAAATATCGTGTACGGGTACTGGTATGTGCTCCATCAAATTCTGCGCTTGATGAGATTGTGTTGCGCCTTCTAA
                               ttctgac  putative branch site (score: 2)
     attttatagt  TA-rich tract