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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactcattgttctatatgggctttatcttagactttctatttattatcaagtgccaattttgaatatcatgtctcctttgagCAGTCTAGAGTAGTTAAGCTCGCTGATGGGGAGAGGTCATACCACATCTTTTATCAACTTTGTGCTGGTGCTCCATCCATTCTCAAAG

Basic information

species Vitis vinifera
transcript Vv19s0014g03640.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0014g03640.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA12G22300.1 (Glycine max), 3'ss of exon 9
gtaactcat--tgttctatatgggctttatcttagactttctatttattatcaagtgccaattttgaat--atcatgtctcctttgagCAGTCTAGAGTAGTTAAGCTCGCTGATGGGGAGAGGTCATACCACATCTTTTATCAACTTTGTGCTGGTGCTCCATCCATTCTCAAAG
|||| |  |  ||   ||| ||    | |   |  | ||  ||| | |  |    || || || ||||    || |||||  | ||||||||||||||| ||| | || ||  |||| ||||| ||||| ||||| ||||||||||||||||||||  || | ||   ||| ||||
gtaatttgtgatgccttatctgaagctaagagtgaaattcttatgt-tcgttttttgtcacttctgaaatagtcttgtctattgtgagcagTCTAGAGTTGTTCAACTGGCCAATGGTGAGAGATCATATCACATATTTTATCAACTTTGTGCTGGATCTTCTTCTGATCTTAAAG

upper sequence: Vv19s0014g03640.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA13G35790.1 (Glycine max), 3'ss of exon 10
gtaactcat--tgttctatatgggctttatcttagactttctatttattatcaagtgccaattttgaa--tatcatgtctcctttgagCAGTCTAGAGTAGTTAAGCTCGCTGATGGGGAGAGGTCATACCACATCTTTTATCAACTTTGTGCTGGTGCTCCATCCATTCTCAAAG
||||||  |  || ||| | ||  |   |   |  |  |   || | |||| |     || || ||||   ||| |||||||| ||  ||||||||||| ||| | || ||    || ||||||||||| ||||| ||||||||||||||||||||  || ||||   ||| ||||
gtaacttgtgatgctctttttgaacaaaagtgtgaaactgaaatat-ttattattcttcacttctgaaatcatcttgtctcctgtgttcagTCTAGAGTTGTTCAACTTGCATTGGGTGAGAGGTCATATCACATATTTTATCAACTTTGTGCTGGATCTTCATCTGATCTTAAAG

upper sequence: Vv19s0014g03640.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA12G34780.1 (Glycine max), 3'ss of exon 11
gtaactcattgttctatatgggctttatcttagactttctatttattatcaagtgccaattttgaa--tatcatgtctcctttgagCAGTCTAGAGTAGTTAAGCTCGCTGATGGGGAGAGGTCATACCACATCTTTTATCAACTTTGTGCTGGTGCTCCATCCATTCTCAAAG
||||||     | || | | |     |  |  ||   |  | |  |||| |     || || ||||   ||| |||||||| ||  ||||| ||||| ||| | || ||    |  ||||||||||| ||||| ||||||||||||||||||||  || ||||   ||| ||||
gtaacttgagatgctcttttgaacaaaagtgtgaaactgaaatatttattattcttcacttctgaaatcatcttgtctcctgtggccagTCAAGAGTTGTTCAACTTGCCTTGGACGAGAGGTCATATCACATATTTTATCAACTTTGTGCTGGATCTTCATCTGATCTTAAAG

upper sequence: Vv19s0014g03640.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA06G39740.1 (Glycine max), 3'ss of exon 9
gtaactcattgttctatatg-ggctttatcttagactttctatttattatcaagtgccaattttgaat--atcatgtctcctttgagCAGTCTAGAGTAGTTAAGCTCGCTGATGGGGAGAGGTCATACCACATCTTTTATCAACTTTGTGCTGGTGCTCCATCCATTCTCAAAG
|||| |  |  |||| |||  |   | |   | || ||  ||| | | ||    || || || ||||   |||||||||  | ||||||||||||||| ||| | || ||  |||| ||||| ||||| ||||| ||||||||||||||| ||||  || ||||   ||| ||||
gtaatttgtgattctttattcgagctaagagtggaattgttatgtttgatttt-tgtcacttctgaaataatcatgtctgttgtgagcagTCTAGAGTTGTTCAACTGGCCAATGGTGAGAGATCATATCACATATTTTATCAACTTTGTACTGGATCTTCATCTGGTCTTAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagactttctatttattatcaagtgccaattttgaatatcatgtctcctttgagCAGTCTAGAGTAGTTAAGCTCGCTGATGGGGAGAGGTCATACCACATCTTTTATCAACTTTGTGCTGGTGCTCCATCCATTCTCAAAG
                                          tgtctccttt  CT-rich tract
      tttctatttattatca  TA-rich tract