1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ctgaagaatttcagaacctgaattgtttccaactcatgagagtttcaaaatgatagattgagtaacttccaacttgtttttttttcctctgtattggtagATTGCTGGACACAAGGACCTTCTTGAAGGGGATCCCTACTTGAAGCAAAGACTCCGCCTGCGTGACTCCTACATCACAACCCTAAATGTCTGCCAAGCAT
species | Vitis vinifera |
transcript | Vv19s0014g01390.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GAGAGCGGTTGAGGTCCAACTATGAACAAACTAAGAGCCTTCTCCTCCAG ATTGCTGGACACAAGGACCTTCTTGAAGGGGATCCCTACTTGAAGCAAAGAEST: gi|110411784|gb|EC977507.1|EC977507
genomic: GAGAGCGGTTGAGGTCCAACTATGAACAAACTAAGAGCCTTCTCCTCCAGgtaagttcgg ... gtattggtagATTGCTGGACACAAGGACCTTCTTGAAGGGGATCCCTACTTGAAGCAAAGA
EST: GAGAGCGGTTGAGGTCCAACTATGAACAAACTAAGAGCCTTCTCCTCCAG ATTGCTGGACACAAGGACCTTTTTGAAGGGGATCCGTACTTGAAGCAAAGAEST: gi|110716237|gb|EE091045.1|EE091045
genomic: GAGAGCGGTTGAGGTCCAACTATGAACAAACTAAGAGCCTTCTCCTCCAGgtaagttcgg ... gtattggtagATTGCTGGACACAAGGACCTTCTTGAAGGGGATCCCTACTTGAAGCAAAGA
EST: GAGAGCGGTTGAGGTCCAACTATGAACAAACTAAGAGCCTTCTCCTCCAG ATTGCTGGACACAAGGACCTTCTTGAAGGGGATCCCTACTTGAAGCAAAGAEST: gi|110361120|gb|EC924573.1|EC924573
genomic: GAGAGCGGTTGAGGTCCAACTATGAACAAACTAAGAGCCTTCTCCTCCAGgtaagttcgg ... gtattggtagATTGCTGGACACAAGGACCTTCTTGAAGGGGATCCCTACTTGAAGCAAAGA
EST: GAGAGCGGTTGAGGTCCAACTATGAACAAACTAAGAGCCTTCTCCTCCAG ATTGCTGGACACAAGGACCTTCTTGAAGGGGATCCCTACTTGAAGCAAAGAEST: gi|30299623|gb|CB976417.1|CB976417
genomic: GAGAGCGGTTGAGGTCCAACTATGAACAAACTAAGAGCCTTCTCCTCCAGgtaagttcgg ... gtattggtagATTGCTGGACACAAGGACCTTCTTGAAGGGGATCCCTACTTGAAGCAAAGA
EST: GAGAGCGGTTGAGGTCCAACTATGAACAAACTAAGAGCCTTCTCCTCCAG ATTGCTGGACACAAGGACCTTCTTGAAGGGGATCCCTACTTGAAGCAAAGAEST: gi|37184689|gb|CF604043.1|CF604043
genomic: GAGAGCGGTTGAGGTCCAACTATGAACAAACTAAGAGCCTTCTCCTCCAGgtaagttcgg ... gtattggtagATTGCTGGACACAAGGACCTTCTTGAAGGGGATCCCTACTTGAAGCAAAGA
EST: GAGAGCGGTTGAGGTCCAACTATGAACAAACTAAGAGCCTTCTCCTCCAG ATTGCTGGACACAAGGACCTTCTTGAAGGGGATCCCTACTTGAAGCAAAGAEST: gi|156735834|gb|EV239955.1|EV239955
genomic: GAGAGCGGTTGAGGTCCAACTATGAACAAACTAAGAGCCTTCTCCTCCAGgtaagttcgg ... gtattggtagATTGCTGGACACAAGGACCTTCTTGAAGGGGATCCCTACTTGAAGCAAAGA
EST: GAGAGCGGTTGAGGTCCAACTATGAACAAACTAAGAGCCTTCTCCTCCAG ATTGCTGGACACAAGGACCTTCTTGAAGGGGATCCCTACTTGAAGCAAAGAEST: gi|110412443|gb|EC978193.1|EC978193
genomic: GAGAGCGGTTGAGGTCCAACTATGAACAAACTAAGAGCCTTCTCCTCCAGgtaagttcgg ... gtattggtagATTGCTGGACACAAGGACCTTCTTGAAGGGGATCCCTACTTGAAGCAAAGA
EST: GAGAGCGGTTGAGGTCCAACTATGAACAAACTAAGAGCCTTCTCCTCCAG ATTGCTGGACACAAGGACCTTCTTGAAGGGGATCCCTACTTGAAGCAAAGAEST: gi|32245132|gb|CD710951.1|CD710951
genomic: GAGAGCGGTTGAGGTCCAACTATGAACAAACTAAGAGCCTTCTCCTCCAGgtaagttcgg ... gtattggtagATTGCTGGACACAAGGACCTTCTTGAAGGGGATCCCTACTTGAAGCAAAGA
EST: GAGAGCGGTTGAGGTCCAACTATGAACAAACTAAGAGCCTTCTCCTCCAG ATTGCTGGACACAAGGACCTTCTTGAAGGGGATCCCTACTTGAAGCAAAGAEST: gi|33409891|gb|CF215518.1|CF215518
genomic: GAGAGCGGTTGAGGTCCAACTATGAACAAACTAAGAGCCTTCTCCTCCAGgtaagttcgg ... gtattggtagATTGCTGGACACAAGGACCTTCTTGAAGGGGATCCCTACTTGAAGCAAAGA
EST: GAGAGCGGTTGAGGTCCAACTATGAACAAACTAAGAGCCTTCTCCCCCAG ATTGCTGGACACAAGGACCTTCTTGAAGGGGATCCCTACGAGAAGCAAAGAEST: gi|110378397|gb|EC943528.1|EC943528
genomic: GAGAGCGGTTGAGGTCCAACTATGAACAAACTAAGAGCCTTCTCCTCCAGgtaagttcgg ... gtattggtagATTGCTGGACACAAGGACCTTCTTGAAGGGGATCCCTACTTGAAGCAAAGA
EST: GAGAGCGGTTGAGGTCCAACTATGAACAAACTAAGAGCCTTCTCCTCCAG ATTGCTGGACACAAGGACCTTCTTGAAGGGGATCCCTACTTGAAGCAAAGAEST: gi|32268837|gb|CD717996.1|CD717996
genomic: GAGAGCGGTTGAGGTCCAACTATGAACAAACTAAGAGCCTTCTCCTCCAGgtaagttcgg ... gtattggtagATTGCTGGACACAAGGACCTTCTTGAAGGGGATCCCTACTTGAAGCAAAGA
EST: GAGAGCGGTTGAGGTCCAACTATGAACAAACTAAGAGCCTTCTCCTCCAG ATTGCTGGACACAAGGACCTTCTTGAAGGGGATCCCTACTTGAAGCAAAGA
genomic: GAGAGCGGTTGAGGTCCAACTATGAACAAACTAAGAGCCTTCTCCTCCAGgtaagttcgg ... gtattggtagATTGCTGGACACAAGGACCTTCTTGAAGGGGATCCCTACTTGAAGCAAAGA
caaaatgatagattgagtaacttccaacttgtttttttttcctctgtattggtagATTGCTGGACACAAGGACCTTCTTGAAGGGGATCCCTACTTGAAGCAAAGACTCCGCCTGCGTGACTCCTACATCACAACCCTAAATGTCTGCCAAGCAT
gagtaac putative branch site (score: 2)
cttccaacttgttttt CT-rich tract
aacttgttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgaagaatttcagaacctgaattgtttccaactcatgagagtttcaaaatgatagattgagtaacttccaacttgtttttttttcctctgtattggtagATTGCTGGACACAAGGACCTTCTTGAAGGGGATCCCTACTTGAAGCAAAGACTCCGCCTGCGTGACTCCTACATCACAACCCTAAATGTCTGCCAAGCAT
- - - - - -cagaacc
- - - - - - - - - - - - - - -caactca
- - - - - - - - - - - - - - - - - - - - - - - aaaatga