1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...attcttcaataaatatctaacaatggaagtggtcatacttcttattgtttcttcacttgagattgctattgattgtccttttattttatctaacaagcagGATGAAATAATCCCACATCTTGAGCCTGGAAGGCTTCCATCCACAGTAGACCCAGATGCCATACAACCACATGACAAGGGGAAAAGATTACCTCAACGTC
species | Vitis vinifera |
transcript | Vv18s0122g00920.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AGTACAAAGGTGCTTGGTGTACTCCTCCCAGAATCTTCATGGATCACCAG GATGAAATAATCCCACATCTTGAGCCTGGAAGGCTTCCATCCACAGTAGACEST: gi|161707354|gb|FC056864.1|FC056864
genomic: AGTACAAAGGTGCTTGGTGTACTCCTCCCAGAATCTTCATGGATCACCAGgtactaccaa ... taacaagcagGATGAAATAATCCCACATCTTGAGCCTGGAAGGCTTCCATCCACAGTAGAC
EST: AGTACAAAGGTGCTTGGTGTACTCCTCCCAGAATCTTCATGGATCACCAG GATGTAATAATCCCACATCTTGAGCCTGGAAGGCTTCCATCCACAGTAGACEST: gi|34545619|gb|CF513851.1|CF513851
genomic: AGTACAAAGGTGCTTGGTGTACTCCTCCCAGAATCTTCATGGATCACCAGgtactaccaa ... taacaagcagGATGAAATAATCCCACATCTTGAGCCTGGAAGGCTTCCATCCACAGTAGAC
EST: AGTACAAAGGTGCTTGGTGTACTCCTCCCAGAATCTTCATGGATCACCAG GATGAAATAATCCCACATCTTGAGCCTGGACGGCTTCCATCCACAGTAGAC
genomic: AGTACAAAGGTGCTTGGTGTACTCCTCCCAGAATCTTCATGGATCACCAGgtactaccaa ... taacaagcagGATGAAATAATCCCACATCTTGAGCCTGGAAGGCTTCCATCCACAGTAGAC
tgtttcttcacttgagattgctattgattgtccttttattttatctaacaagcagGATGAAATAATCCCACATCTTGAGCCTGGAAGGCTTCCATCCACAGTAGACCCAGATGCCATACAACCACATGACAAGGGGAAAAGATTACCTCAACGTC
atctaac putative branch site (score: 2)
tccttttattttatct CT-rich tract
ttttattttatctaac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attcttcaataaatatctaacaatggaagtggtcatacttcttattgtttcttcacttgagattgctattgattgtccttttattttatctaacaagcagGATGAAATAATCCCACATCTTGAGCCTGGAAGGCTTCCATCCACAGTAGACCCAGATGCCATACAACCACATGACAAGGGGAAAAGATTACCTCAACGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - -aataaat
- - - - - - - - - - -aatggaa
- - - - - - - - - - - - - - - - - - - - - - - - -tcttcac