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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaatttgtacattatgttgcctcactcttagtcttctgtcaccccctaaatttcatgtacgaaaggcatggcctgtttttgattcttttattgtcaatgaatctcttctataaatggtcatttcctctgtcttatcagcatttgtttactggtggcttattactgtgtctacttgtcagGTAAAAGCTGGATAAAGTCAATGATACTCACTGCATCACTTTTCCCGTTTATGTGCTTTGGGATTGGTTTCATCTTGAACACAATTGCTATATTCTATGG

Basic information

species Vitis vinifera
transcript Vv18s0041g00680.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0041g00680.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: LOC_Os11g07910.1 (Oryza sativa), 3'ss of exon 9
gtaagtaatttgtacattatgttgcctcactcttagtcttctgtcaccccctaaatttcatgtacgaaaggcatggcctgtttttgattcttttattgtcaatgaatctcttctat----aaatggt-catttcctctgtcttatcagcatttgtttactggtggcttattactgtgtctacttgtcagGTAAAAGCTGGATAAAGTCAATGATACTCACTGCATCACTTTTCCCGTTTATGTGCTTTGGGATTGGTTTCATCTTGAACACAATTGCTATATTCTATGG
                                       | |||  |    || ||    | |      ||  | ||| |||||  |||||  |||  | ||  |   | |||  |    ||||| | || || || ||| |  | | |   |||| ||||       ||| |||  || |  || |||| |||| |||||||||||| ||||| || |||||||| ||||| |||||  ||||||||  |||||| ||  | |||||||| |||||||| |||||  |
--------------------------------------gtatgtttctatatatatagtttttgttgttggacttgcccgtttt--attctactatcctgaaatagattattcagttttgaaatgtttcaatttctgtgtttc-ttatctactgttcactga--atccatttctg-atcca--tggcagGCAAAAACTGGATAAAGTCTATGATCCTTACTGCATCCCTTTTTCCGTTCTTGTGCTTTTCGATTGGATTGGTGTTGAACACCATTGCTATCTTCTACCG

upper sequence: Vv18s0041g00680.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: LOC_Os02g34690.1 (Oryza sativa), 3'ss of exon 9
gtaagtaatttgtacattatgttgcctcactcttagtcttctgtcaccccctaaatttcatgtacgaaaggcatggcctgtttttgattcttttattgtcaatgaatctcttctataaatggtcatttcctctgtcttatcagcatttgtttactggtggcttattactgtgtctacttgtcagGTAAAAGCTGGATAAAGTCAATGATACTCACTGCATCACTTTTCCCGTTTATGTGCTTTGGGATTGGTTTCATCTTGAACACAATTGCTATATTCTATGG
                                                                                          | | |       | | | |      | ||  | ||    | || | |||  |  |  || | ||       | | | ||  || | ||   |||| |||| |||||| ||| |||||||  | || |||||||| || ||||||||||||||||| |||||  |  |  | |||||||| |||||||||||| |
-----------------------------------------------------------------------------------------gtatgaactcagtttactttacatcttgaacaggcacacac-ctattttactataagatgctcacct-catttaaatccttggtttgctgagcagGGAAAAACTGGATCAAGGCAATGATTATGACAGCATCACTATTTCCGTTTATGTGCTTTGGAATTGGCCTAGTGCTTAACACAATCGCTATATTCTATCG

upper sequence: Vv18s0041g00680.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GRMZM2G165631_T01 (Zea mays), 3'ss of exon 8
gtaagtaatttgtacattatgttgcctcactcttagtcttctgtcaccccctaaatttcatgtacgaaaggcatggcctgtttttgattcttttattgtcaatgaatctcttctataaatggtcatttcctctgtcttatcagcatttgtttactggtggcttattactgtgtctacttgtcagGTAAAAGCTGGATAAAGTCAATGATACTCACTGCATCACTTTTCCCGTTTATGTGCTTTGGGATTGGTTTCATCTTGAACACAATTGCTATATTCTATGG
                                                                                             ||| | |  |   | || | || || ||  |  |    || |  |   |  |  || | | | ||     ||   | ||         |||| |||| |||||| ||| |||||    | || |||||||||||||| |||||||||||||| |||||  |  |  | ||||| ||||||||         
--------------------------------------------------------------------------------------------gtatgggct-tatttatcatgtaaaattgaactgtatacctatagttctataaggtgctcagttgttttaaatccttttggagGAGGAGCAGGGAAAAACTGGATCAAGGCAATGGCCATGACAGCATCACTTTTCCCATTTATGTGCTTTGGAATTGGCCTGGTGCTTAACACTATTGCTAT---------

upper sequence: Vv18s0041g00680.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA08G20100.1 (Glycine max), 3'ss of exon 9
gtaagtaatttgtacattatgttgcctcactcttagtcttctgtcaccccctaaatttcatgtacgaaaggcatggcctgtttttgattcttttattgtcaatgaatctcttctataaatggtcatttcctctgtcttatcagcatttgtttactggtggcttattactgtgtctac--ttgtcagGTAAAAGCTGGATAAAGTCAATGATACTCACTGCATCACTTTTCCCGTTTATGTGCTTTGGGATTGGTTTCATCTTGAACACAATTGCTATATTCTATGG
                                                                                          |   | | |  ||  |||| | ||| |  || |  |||      |  | ||  | | ||  |       | |||| || |||  ||   || ||||||||||  ||||| || || ||||| || || |||||||| ||||| || ||||||||||| |||||||| || || |||||||||||||||||||||||
-----------------------------------------------------------------------------------------gtaagaatttgcattgatctttgctaca--tgtttgtttgggtgcttctctctccctctgaat-------gattataaccgtgcttataattttcagGTAAAAATTGGATTAAATCCATGATCCTTACAGCATCACTGTTCCCATTCATGTGCTTTGGAATTGGTTTTATTTTAAACACAATTGCTATATTCTATGG

upper sequence: Vv18s0041g00680.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA12G29120.1 (Glycine max), 3'ss of exon 9
gtaagtaatttgtacattatgttgcctcactcttagtcttctgtcaccccctaaatttcatgtacgaaaggcatggcctgtttttgattcttttattgtcaatgaatctcttctataaatggtcatttcctctgtcttatcagcatttgtttactggtggcttattactgtgtctac--ttgtcagGTAAAAGCTGGATAAAGTCAATGATACTCACTGCATCACTTTTCCCGTTTATGTGCTTTGGGATTGGTTTCATCTTGAACACAATTGCTATATTCTATGG
                                                                           |   | ||   |||  | |||  |  |||  |    |  ||   || | |  | |       | ||    | | | | |||   | |||| ||||||  ||   || ||||||||||  ||||| || || ||||| || || |||||||| ||||| || ||||||||||| |||||||| || || ||||| |||||||||||||||||
---------------------------------------------------------------------------gtaagattcgcattgatctatgctacatg--ttctcttgatgtttgtttaggtgcctctctctctctctctctctct-ctgaatgattatgactgtgcttatcattttcagGTAAAAATTGGATTAAATCCATGATCCTTACAGCATCACTGTTCCCTTTCATGTGCTTTGGAATTGGTTTTATTTTAAACACTATTGCTATATTCTATGG

upper sequence: Vv18s0041g00680.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA08G13370.1 (Glycine max), 3'ss of exon 9
gtaagtaatttgtacattatgttgcctcactcttagtcttctgtcaccccctaaatttcatgtacgaaaggcatggcctgtttttgattcttt-tattgtcaatgaatctcttctataaatggtcatttcctctgtcttatcagcatttgtttactggtggct-tattactgt-----gtctacttgtcagGTAAAAGCTGGATAAAGTCAATGATACTCACTGCATCACTTTTCCCGTTTATGTGCTTTGGGATTGGTTTCATCTTGAACACAATTGCTATATTCTATGG
                                                                      | | |     | ||| ||| | | |||| ||  |     | |  | |   |||   ||  ||| ||||| ||  | |||| ||     ||  | | | ||| |      |||  |||| |||||||  |||||| || || ||||| || ||||| || || ||||| || ||||||||||| ||||| || ||||| |||||||| ||||||||||||||
----------------------------------------------------------------------gtaagaatcttctttaattttctgtattttcgctcctagtatgtt-tgggtggct-ttgtctcagtcttctc--cttttggttttgaatgattatgtaactattttttatctgtttgttagGTAAACACTGGATTAAATCCATGATTCTTACTGCTTCTCTGTTCCCATTCATGTGCTTTGGAATTGGATTTATCTTAAACACAATCGCTATATTCTATGG

upper sequence: Vv18s0041g00680.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA05G30210.1 (Glycine max), 3'ss of exon 9
gtaagtaatttgtacattatgttgcctcactcttagtcttctgtcaccccctaaatttcatgtacgaaaggcatggcctgtttttgattcttt-tattgtcaatgaatctcttctataaatggtcatttcctctgtcttatcagcatttgtttactggtggct----tattactgtgtctacttgtcagGTAAAAGCTGGATAAAGTCAATGATACTCACTGCATCACTTTTCCCGTTTATGTGCTTTGGGATTGGTTTCATCTTGAACACAATTGCTATATTCTATGG
                                                                      | | |     | ||| ||| | | |||  ||  |  |  | |  | |   |||   ||  ||| ||||| ||    |||| ||     ||  |     | || | | | |  |||| |||||||  |||||| || || ||||| || || || || || ||||| || ||||||||||| ||||| || || || |||||||| ||||||||||||||
----------------------------------------------------------------------gtaagtatcttctttaattttctgtatattcgctccaagtatgtt-tgggtggct-ttgtctcagtcttctc--tttttggttttgaatgattatgcaactaatttttatgtttgttagGTAAACACTGGATTAAATCCATGATCCTTACAGCTTCTCTGTTCCCATTCATGTGCTTTGGAATTGGATTTATATTAAACACAATCGCTATATTCTATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctgtcttatcagcatttgtttactggtggcttattactgtgtctacttgtcagGTAAAAGCTGGATAAAGTCAATGATACTCACTGCATCACTTTTCCCGTTTATGTGCTTTGGGATTGGTTTCATCTTGAACACAATTGCTATATTCTATGG
                                           tctactt  CT-rich tract
               atttgttta  TA-rich tract