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...aatatgacaatgctatcaatttgaacaagcctgtagaattatgtgtaaattgaaccttgggtgaaaaaggaggttttaatgtaaatttgtatgttttcagGCCCAGTGGTCAGCCTTGTATTGAAACAAAGGAGTTTGATCTTGTGCGCAACATGCTGATTGCAGCAGTTGAGGAACGCTATAGAGATGCTG
species | Vitis vinifera |
transcript | Vv18s0001g12960.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TCGGTGCAGGCCTCTTCTTCGGATGGCTTATTATTCACAGAACTTGATAG GCCCAGTGGTCAGCCTTGTATTGAAACAAAGGAGTTTGATCTTGTGCGCAAEST: gi|45770383|gb|CN006235.1|CN006235
genomic: TCGGTGCAGGCCTCTTCTTCGGATGGCTTATTATTCACAGAACTTGATAGgtaaatttta ... atgttttcagGCCCAGTGGTCAGCCTTGTATTGAAACAAAGGAGTTTGATCTTGTGCGCAA
EST: TCGGTGCAGGCCTCTTCTTCGGATGGCTTATTATTCACAGAACTTGATAG GCCCAGTGGTCAGCCTTGTATTGAAACAAAGGAGTTTGATCTTGTGCGCAAEST: gi|22007151|gb|BQ792185.1|BQ792185
genomic: TCGGTGCAGGCCTCTTCTTCGGATGGCTTATTATTCACAGAACTTGATAGgtaaatttta ... atgttttcagGCCCAGTGGTCAGCCTTGTATTGAAACAAAGGAGTTTGATCTTGTGCGCAA
EST: TCGGTGCAGGCCTCTTCTTCGGATGGCTTATTATTCACAGAACTTGATAG GCCCAGTGGTCAGCCTTGTATTGAAACAAAGGAGTTTGATCTTGTGCGCAAEST: gi|26261297|gb|CA812360.1|CA812360
genomic: TCGGTGCAGGCCTCTTCTTCGGATGGCTTATTATTCACAGAACTTGATAGgtaaatttta ... atgttttcagGCCCAGTGGTCAGCCTTGTATTGAAACAAAGGAGTTTGATCTTGTGCGCAA
EST: TCGGTGCAGGCCTCTTCTTCGGATGGCTTATTATTCACAGAACTTGATAG GCCCAGTGGTCAGCCTTGTATTGAAACAAAGGAGTTTGATCTTGTGCGCAAEST: gi|254915447|gb|GR904878.1|GR904878
genomic: TCGGTGCAGGCCTCTTCTTCGGATGGCTTATTATTCACAGAACTTGATAGgtaaatttta ... atgttttcagGCCCAGTGGTCAGCCTTGTATTGAAACAAAGGAGTTTGATCTTGTGCGCAA
EST: TCGGTGCAGGCCTCTTCTTCGGATGGCTTATTATTCACAGAACTTGATAG GCCCAGTGGTCAGCCTTGTATTGAAACAAAGGAGTTTGATCTTGTGCGCAAEST: gi|46919387|gb|CN548716.1|CN548716
genomic: TCGGTGCAGGCCTCTTCTTCGGATGGCTTATTATTCACAGAACTTGATAGgtaaatttta ... atgttttcagGCCCAGTGGTCAGCCTTGTATTGAAACAAAGGAGTTTGATCTTGTGCGCAA
EST: TCGGTGCAGGCCTCTTCTTCGGATGGCTTATTATTCACAGAACTTGATAG GCCCAGTGGTCAGCCTTGTATTGACACAAAGGAGTTTGATCTTGTGCGCAAEST: gi|32246108|gb|CD711927.1|CD711927
genomic: TCGGTGCAGGCCTCTTCTTCGGATGGCTTATTATTCACAGAACTTGATAGgtaaatttta ... atgttttcagGCCCAGTGGTCAGCCTTGTATTGAAACAAAGGAGTTTGATCTTGTGCGCAA
EST: TCGGTGCAGGCCTCTTCTTCGGATGGCTTATTATTCACAGAACTTGATAG GCCCAGTGGTCAGCCTTGTATTGAAACAAAGGAGTTTGATCTTGTGCGCAAEST: gi|26260812|gb|CA811875.1|CA811875
genomic: TCGGTGCAGGCCTCTTCTTCGGATGGCTTATTATTCACAGAACTTGATAGgtaaatttta ... atgttttcagGCCCAGTGGTCAGCCTTGTATTGAAACAAAGGAGTTTGATCTTGTGCGCAA
EST: TCGGTGCAGGCCTCTTCTTCGGATGGCTTATTATTCACAGAACTTGATAG GCCCAGTGGTCAGCCTTGTATTGAAACAAAGGAGTTTGATCTTGTGCGCAA
genomic: TCGGTGCAGGCCTCTTCTTCGGATGGCTTATTATTCACAGAACTTGATAGgtaaatttta ... atgttttcagGCCCAGTGGTCAGCCTTGTATTGAAACAAAGGAGTTTGATCTTGTGCGCAA
taaattgaaccttgggtgaaaaaggaggttttaatgtaaatttgtatgttttcagGCCCAGTGGTCAGCCTTGTATTGAAACAAAGGAGTTTGATCTTGTGCGCAACATGCTGATTGCAGCAGTTGAGGAACGCTATAGAGATGCTG
ttttaat putative branch site (score: 3)
tgttttc putative PPT
ttttaatgtaaatttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatatgacaatgctatcaatttgaacaagcctgtagaattatgtgtaaattgaaccttgggtgaaaaaggaggttttaatgtaaatttgtatgttttcagGCCCAGTGGTCAGCCTTGTATTGAAACAAAGGAGTTTGATCTTGTGCGCAACATGCTGATTGCAGCAGTTGAGGAACGCTATAGAGATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - -caatgct
- - - - - - - - - - - - acaagcc
- - - - - - - - - - - - - - - - - - - - - - - aaattga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgtaaa