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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgccaactcctctctcactctctctatctctcttctctctcttcacagattgattaactctaatgcgggaaaaccttcttggttggttatgtttgatttcagATGGATCTAGATATAGTAGTGGAAGTGACTAGCCAATCCTCCTCAACTACATTTGCATTCCACGAGCACTAACAATTATTTATTTAATAGCTTAAATCGG

Basic information

species Vitis vinifera
transcript Vv18s0001g10700.t01
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110362650|gb|EC926197.1|EC926197
EST:     TTGCTCAAGTTGCCAGGAGAAGAAAGAAGCCATGGAAGGGAGAAGAGGAG                         ATGGATCTAGATATAGTAGTGGAAGTGACTAGCCAATCCTCCTCAACTACA
genomic: TTGCTCAAGTTGCCAGGAGAAGAAAGAAGCCATGGAAGGGAGAAGAGGAGgtatgccaac ... ttgatttcagATGGATCTAGATATAGTAGTGGAAGTGACTAGCCAATCCTCCTCAACTACA
EST: gi|110370571|gb|EC930039.1|EC930039
EST:     TTGCTCAAGTTGCCAGGAGAAGAAAGAAGCCATGGAAGGGAGAAGAGGAG                         ATGGATCTAGATATAGTAGTGGAAGTGACTAGCCAATCCTCCTCAACTACA
genomic: TTGCTCAAGTTGCCAGGAGAAGAAAGAAGCCATGGAAGGGAGAAGAGGAGgtatgccaac ... ttgatttcagATGGATCTAGATATAGTAGTGGAAGTGACTAGCCAATCCTCCTCAACTACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattgattaactctaatgcgggaaaaccttcttggttggttatgtttgatttcagATGGATCTAGATATAGTAGTGGAAGTGACTAGCCAATCCTCCTCAACTACATTTGCATTCCACGAGCACTAACAATTATTTATTTAATAGCTTAAATCGG
                                       ttatgttt  TA-rich tract