1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tctaaaatttttggtgcagtttgctgatgtatgaagaattgaatattgtaaattcgctttgtttatctagtttttatttctcatttttcctattttacagCTGGAAAATCTCGATTCGGAAGCCTTTTGTTACTTGGTCAATCCGCTGGAAAAACAGACAGGCTTTACATGAAAGGTCCTGGAGGGCGTGGGGAAGTTGA
species | Vitis vinifera |
transcript | Vv18s0001g08720.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TCTTTTCTCTGGATTTGTCAGCTATCAAATGGTTCGAGAAGCATATGATG CTGGAAAATCTCGATTCGGAAGCCTTTTGTTACTTGGTCAATCCGCTGGAAEST: gi|110714422|gb|EE091311.1|EE091311
genomic: TCTTTTCTCTGGATTTGTCAGCTATCAAATGGTTCGAGAAGCATATGATGgtatattttt ... tattttacagCTGGAAAATCTCGATTCGGAAGCCTTTTGTTACTTGGTCAATCCGCTGGAA
EST: TCTTTTCTCTGGATTTGTCAGCTATCAAATGGTTCGAGAAGCATATGATG CTGGAAAATCTCGATTCGGAAGCCTTTTGTTACTTGGTCAATCCGCTGGAA
genomic: TCTTTTCTCTGGATTTGTCAGCTATCAAATGGTTCGAGAAGCATATGATGgtatattttt ... tattttacagCTGGAAAATCTCGATTCGGAAGCCTTTTGTTACTTGGTCAATCCGCTGGAA
ttgtaaattcgctttgtttatctagtttttatttctcatttttcctattttacagCTGGAAAATCTCGATTCGGAAGCCTTTTGTTACTTGGTCAATCCGCTGGAAAAACAGACAGGCTTTACATGAAAGGTCCTGGAGGGCGTGGGGAAGTTGA
tttttatttctcattt CT-rich tract
tttatctagtttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctaaaatttttggtgcagtttgctgatgtatgaagaattgaatattgtaaattcgctttgtttatctagtttttatttctcatttttcctattttacagCTGGAAAATCTCGATTCGGAAGCCTTTTGTTACTTGGTCAATCCGCTGGAAAAACAGACAGGCTTTACATGAAAGGTCCTGGAGGGCGTGGGGAAGTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - tgcagtt
- - - - - - - - - - -tgctgat
- - - - - - - - - - - - - - - - - - aattgaa