1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttaatagtggcataacattttgttgattttctgtttgtaatctgccttaaaagttgattttgttagtggtgtaaaagaaactcttttaatggaaatgcagTCCCGGAAGATGCAAGAAAGGGGTTGGAAGCCAAGGTGGTTTGTAAAGGATAAAGGCAGCGATACCTATCGCTATGTTGGTGGGTATTGGGAGGCAAGAG
species | Vitis vinifera |
transcript | Vv18s0001g03790.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATGAAAAGGCAAATTCAGAGAAGTTGCGGCTTGAGCAGCGACAGCGCCAG TCCCGGAAGATGCAAGAAAGGGGTTGGAAGCCAAGGTGGTTTGTAAAGGATEST: gi|110410950|gb|EC976646.1|EC976646
genomic: ATGAAAAGGCAAATTCAGAGAAGTTGCGGCTTGAGCAGCGACAGCGCCAGgtaaatcata ... ggaaatgcagTCCCGGAAGATGCAAGAAAGGGGTTGGAAGCCAAGGTGGTTTGTAAAGGAT
EST: ATGAAAAGGCAAATTCAGAGAAGTTGCGGCTTGAGCAGCGACAGCGCCAG TCCCGGAAGATGCAAGAAAGGGGTTGGAAGCCAAGGTGGTTTGTAAAGGATEST: gi|161719223|gb|FC065737.1|FC065737
genomic: ATGAAAAGGCAAATTCAGAGAAGTTGCGGCTTGAGCAGCGACAGCGCCAGgtaaatcata ... ggaaatgcagTCCCGGAAGATGCAAGAAAGGGGTTGGAAGCCAAGGTGGTTTGTAAAGGAT
EST: ATGAAAAGGCAAATTCAGAGAAGTTGCGGCTTGAGCAGCGACAGCGCCAG TCCCGGAAGATGCAAGAAAGGGGTTGGAAGCCAAGGTGGTTTGTAAAGGAT
genomic: ATGAAAAGGCAAATTCAGAGAAGTTGCGGCTTGAGCAGCGACAGCGCCAGgtaaatcata ... ggaaatgcagTCCCGGAAGATGCAAGAAAGGGGTTGGAAGCCAAGGTGGTTTGTAAAGGAT
cttaaaagttgattttgttagtggtgtaaaagaaactcttttaatggaaatgcagTCCCGGAAGATGCAAGAAAGGGGTTGGAAGCCAAGGTGGTTTGTAAAGGATAAAGGCAGCGATACCTATCGCTATGTTGGTGGGTATTGGGAGGCAAGAG
ttttaat putative branch site (score: 3)
attttgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaatagtggcataacattttgttgattttctgtttgtaatctgccttaaaagttgattttgttagtggtgtaaaagaaactcttttaatggaaatgcagTCCCGGAAGATGCAAGAAAGGGGTTGGAAGCCAAGGTGGTTTGTAAAGGATAAAGGCAGCGATACCTATCGCTATGTTGGTGGGTATTGGGAGGCAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - cataaca
- - - - - - - - - - - - - - - ctgtttg
- - - - - - - - - - - - - - - - - - - - tctgcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agtggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagaaa