Sequence
atgc intronic sequence ATGC exonic sequence...acctacccttctgaatagttgggataaggatgatttgagcatttaagttgaattagacacattgatgcatcttaatattatagatggtttatatctgcagAAATGGTGTAAAGCTTGTGTTTTGCTGGAAGGATTGAACCGCGGTTTGCCAAAGTTGGGTATTGGGCGGACTCGAGGCCTCAATAATGGTCTTGAGTGCG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g00440.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA04G00350.2 (Glycine max), 3'ss of exon 2
acctacccttctgaatagttgggataaggatgatttg-agcatttaagttgaattagacacattgatgcatcttaatattatagatggt-ttatatctgcagAAATGGTGTAAAGCTTGTGTTTTGCTGGAAGGATTGAACCGCGGTTTGCCAAAGTTGGGTATTGGGCGGACTCGAGGCCTCAATAATGGTCTTGAGTGCG---
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-----------------------gtatatatgaaccacagcatcaaaaccctaatctaatcctccccctccataaacaaagtcagtgttgttttatgtgcagAAATGGTGTAAAGCTTGTGTTCTGCTTGATGGACTGAATAGAGGTTTGCCTAAACTGGGGATTGGACGAAGTCGTGGC---AGTGTTGCTTCTGATAATGGAA
upper sequence: Vv18s0001g00440.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT2G44270.1 (Arabidopsis thaliana), 3'ss of exon 9
---acctacccttctgaatagttgggataaggatgatttgagcatttaagttgaattagacacattgatgcatcttaatattatagatggtttatatctgcagAAATGGTGTAAAGCTTGTGTTTTGCTGGAAGGATTGAACCGCGGTTTGCCAAAGTTGGGTATTGGGCGGACTCGAGGCCTCAATAATGGTCTTGAGTGCG
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gtgagacctctcttttatcacatcaagtaaattgttttccataattagagttagtatatagtgtttgat---tgtttggattacaaatg------atatgcagAAATGGTGTAAAGCTTGTGTTTTGCTGGAAGGACTGAACCGTGGTTTGCCTAAGATGGGTATTGGAAGACCTCGAGGCGTAAATGGTGATCATAATAAGG
upper sequence: Vv18s0001g00440.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT1G76170.1 (Arabidopsis thaliana), 3'ss of exon 9
----acctacccttctgaatagttgggataaggatgatttgagcatttaagttgaattagacacattgatgcatc--ttaatattatagatggt-ttatat----ctgcagAAATGGTGTAAAGCTTGTGTTTTGCTGGAAGGATTGAACCGCGGTTTGCCAAAGTTGGGTATTGGGCGGACTCGAGGCCTCAATAATGGTCTTGAGTGCG
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gtgagacttctctctttatcacatcaagtcatgttatagatatgaactaacaaagagtaaaaagatgtgcactgtagtaaatataatgaatgatcttatacgatgatgcagAAATGGTGCAAAGCTTGTGTTTTGTTGGAAGGATTGAACCGTGGTCTGCCTAAGATGGGCATTGGAAGACCAAGAGGAAACGTAAATGGTGATTATAAGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agttgaattagacacattgatgcatcttaatattatagatggtttatatctgcagAAATGGTGTAAAGCTTGTGTTTTGCTGGAAGGATTGAACCGCGGTTTGCCAAAGTTGGGTATTGGGCGGACTCGAGGCCTCAATAATGGTCTTGAGTGCG
tcttaat putative branch site (score: 3)
ttaatattatagatgg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
acctacccttctgaatagttgggataaggatgatttgagcatttaagttgaattagacacattgatgcatcttaatattatagatggtttatatctgcagAAATGGTGTAAAGCTTGTGTTTTGCTGGAAGGATTGAACCGCGGTTTGCCAAAGTTGGGTATTGGGCGGACTCGAGGCCTCAATAATGGTCTTGAGTGCG
- - -cccttct
- - - - - - - -tagttgg
- - - - - - - - - - - -ataagga
- - - - - - - - - - - - - - - - - - - - - - - - - - - agacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tagatgg