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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctgttttttttgttctgtgcttgcaccttcaaccttgtcaaggaacagaattcaaactgcttatgaactttgacatgtctcttcattgcagGAGATATTTTGGACACAAGCCTACCATTCGTCCAAATGCCAAAAAACTATCTCGGTTGTTCCTGAATAAAGGTAACACGAGTTGGGAAGTGTTTGCCTCT

Basic information

species Vitis vinifera
transcript Vv18s0001g00100.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g00100.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA04G02010.1 (Glycine max), 3'ss of exon 9
gtatgctgttttttttgttctgtgcttgcaccttcaaccttgtcaaggaacaga-attcaaactgcttatgaactttgacatgtctcttcattgcagGAGATATTTTGGACACAAGCCTACCATTCGTCCAAATGCCAAAAAACTATCTCGGTTGTTCCTGAATAAAGGTAACACGAGTTGGGAAGTGTTTGCCTCT
       || |      || |     |  |  ||      |||  |   || || ||  | ||  || || | ||||  |  |   |||  ||| |||||||| ||||| || || || ||||||||||||||||| |||||||| | ||| |||||| |||||| | ||||  ||| ||||||||  ||||| |||
-------gtatgcaccatt-tacatctttattttattttctgttgaatcactgatatctatac--ctaattagcttt--ctgggaactttcttgtagGAGATACTTTGGCCATAAACCAACCATTCGTCCAAATGCTAAAAAACTTTATCGATTGTTCTTGAATAGAAGTAATTCGACTTGGGAAGCTTTTGCTTCT

upper sequence: Vv18s0001g00100.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA06G02110.1 (Glycine max), 3'ss of exon 8
gtatgctgttttttttgttctgtgcttgcaccttcaaccttgtcaaggaacagaattcaaactgcttatgaactttgacatgtctcttcattgcagGAGATATTTTGGACACAAGCCTACCATTCGTCCAAATGCCAAAAAACTATCTCGGTTGTTCCTGAATAAAGGTAACACGAGTTGGGAAGTGTTTGCCTCT
       || | |    ||     |||  | |||      |||  |  |     ||  | ||  || || | ||||  | ||   |||  ||| |||||||| ||||| || || || ||||||||||||||||| |||||||| | ||| |||||| |||||| | ||||  | |  |||||||  ||||| |||
-------gtatgtaccatttacatcttttatcttattttctgttgatcactgatatctatac--ctaattagcttt--cttggaactttcttgtagGAGATACTTTGGCCATAAACCAACCATTCGTCCAAATGCTAAAAAACTTTATCGATTGTTCTTGAATAGAAGTAATTCAACATGGGAAGCTTTTGCTTCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcaaggaacagaattcaaactgcttatgaactttgacatgtctcttcattgcagGAGATATTTTGGACACAAGCCTACCATTCGTCCAAATGCCAAAAAACTATCTCGGTTGTTCCTGAATAAAGGTAACACGAGTTGGGAAGTGTTTGCCTCT
                               ctttgac  putative branch site (score: 4)
                                         tctcttcatt  putative PPT
            aattcaaa  TA-rich tract