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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcagagaccctttgaacataggatcaaatcaaatatttccatttttccatttttccatttttccattttggttaatttggttgcaaatgggggtttttgactgctgggatcccatgggcagGCCTTCAACACCAGTCAGAACAACATGCTGATACTCCAAGAGAGCTGCATAGACTCATCAGGTTCCCTAGTCATCTACTGCCCAGTTGATCTACCTGCCA

Basic information

species Vitis vinifera
transcript Vv17s0053g00780.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0053g00780.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA16G34350.1 (Glycine max), 3'ss of exon 9
gtaagtcagagaccctttgaacataggatcaaatcaaatatttccatttttccatttttccatttttccattttggttaattt--ggttgcaaa-tgggggtttttgactgctgggatcccatgggcagGCCTTCAACACCAGTCAGAACAACATGCTGATACTCCAAGAGAGCTGCATAGACTCATCAGGTTCCCTAGTCATCTACTGCCCAGTTGATCTACCTGCCA
                            || |||  ||   ||  | | |  |  |||    | ||| || |    | |||||    || |||  |     || ||| |  ||    | |       |||| |||||| | ||||| |||||||||||||| ||||| ||||||||  | ||||| ||||||||||||||  | ||||| ||||||||||| || ||||
---------------------------ctctaatttaagccttaaactgtctccctttgttttgttttcaatgcaatcaatttcaacttacaatctctaccttgttgtccacttaatttcttca--tagGCATTCAACTCAAGTCAAAACAACATGCTGATCCTCCAGGAGAGCTGTGTGGACTCCTCAGGTTCCCTAGTGGTGTACTGTCCAGTTGATCTGCCAGCCA

upper sequence: Vv17s0053g00780.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA09G29810.1 (Glycine max), 3'ss of exon 9
gtaagtcagagaccctttgaacataggatcaaatcaaatat-ttccatttttccatttttccatttttccattttggttaatttggttgcaaatgggggtttttgactgctgggatcccatgggcagGCCTTCAACACCAGTCAGAACAACATGCTGATACTCCAAGAGAGCTGCATAGACTCATCAGGTTCCCTAGTCATCTACTGCCCAGTTGATCTACCTGCCA
     | |  |||      ||  |  ||| || | ||   |  ||   || ||| |||||   | |||||| |    | |||||     |||||     | | |   |  ||             |||| |||||| | ||||| |||||||||||||| ||||| ||||||||  | ||||| ||||||||||||||  | ||||| ||||||||||| || ||||
-----taaatgac------aatctgtgattaatttaagcctactcttgttgtccctttttttttgtttccaatgcaatcaattt-----caaattacaatctctacttcttga-----------tagGCATTCAACTCAAGTCAAAACAACATGCTGATCCTCCAGGAGAGCTGTGTGGACTCCTCAGGTTCCCTAGTGGTGTACTGTCCAGTTGATCTGCCAGCCA

upper sequence: Vv17s0053g00780.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT1G17920.1 (Arabidopsis thaliana), 3'ss of exon 9
gtaagtcagagaccctttgaacataggatcaaatcaaatatttccatttttccatttttccatttttccattttggttaatttggttgcaaatgggggtttttgactgctgggatcccatgggcagGCCTTCAACACCAGTCAGAACAACATGCTGATACTCCAAGAGAGCTGCATAGACTCATCAGGTTC---CCTAGTCATCTACTGCCCAGTTGATCTACCTGCCA
                  | |     | |||  | |||   | |   ||||    || |  ||| ||| |  |  | |||||||||| |         || ||  |  | ||||| | |||       | ||| || ||  || ||||||||| |||| || ||||| |||||||||||||||||| || |    || || ||||||   ||||| ||||         
------------------gtaagcttgctcatttgaaactatacagatttttggattcttgattcttcaaact--gataatttggttcct--------ttgttttcatcagGGATTCAATG-------CATCATCATCA--CAAAACAACATGTTGATTCTACAAGAAAGCTGCATAGACTCATCAAGTGCAGCGCTTGTGATCTACACTCCAGTGGATC---------


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttggttaatttggttgcaaatgggggtttttgactgctgggatcccatgggcagGCCTTCAACACCAGTCAGAACAACATGCTGATACTCCAAGAGAGCTGCATAGACTCATCAGGTTCCCTAGTCATCTACTGCCCAGTTGATCTACCTGCCA
                            ttttgac  putative branch site (score: 3)
     ttaattt  TA-rich tract