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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtagtgccctcttatccaggcattgcactgttttctaatggtcaggtttcctgtagttatcattctcaaagtttcacttctttgtcccaatgcagGCAACTTTATCAGATATTCTCAGGCAACTTG

Basic information

species Vitis vinifera
transcript Vv17s0000g00960.t01
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30301837|gb|CB978631.1|CB978631
EST:     AAATGCATGCAGTAGTAGTAGATATTCTGAAGCAAGTAGACTTTAATACT                         GCAACTTTATCAGATATTCTCAGGCAACTTG
genomic: AAATGCATGCAGTAGTAGTAGATATTCTGAAGCAAGTAGACTTTAATACTgtaagtagtg ... cccaatgcagGCAACTTTATCAGATATTCTCAGGCAACTTG
EST: gi|32245822|gb|CD711641.1|CD711641
EST:     AAATGCATGCAGTAGTAGTAGATATTCTGAAGCAAGTAGACTTTAATACT                         GCAACTTTATCAGATATTCTCAGGCAACTTG
genomic: AAATGCATGCAGTAGTAGTAGATATTCTGAAGCAAGTAGACTTTAATACTgtaagtagtg ... cccaatgcagGCAACTTTATCAGATATTCTCAGGCAACTTG
EST: gi|352772615|gb|FQ472090.1|FQ472090
EST:     AAATGCATGCAGTAGTAGTAGATATTCTGAAGCAAGTAGACTTTAATACT                         GCAACTTTATCAGATATTTTCAGGCAACTTG
genomic: AAATGCATGCAGTAGTAGTAGATATTCTGAAGCAAGTAGACTTTAATACTgtaagtagtg ... cccaatgcagGCAACTTTATCAGATATTCTCAGGCAACTTG
EST: gi|352773138|gb|FQ470753.1|FQ470753
EST:     AAATGCATGCAGTAGTAGTAGATATTCTGAAGCAAGTAGACTTTAATACT                         GCAACTTTATCAGATATTCTCAGGCAACTTG
genomic: AAATGCATGCAGTAGTAGTAGATATTCTGAAGCAAGTAGACTTTAATACTgtaagtagtg ... cccaatgcagGCAACTTTATCAGATATTCTCAGGCAACTTG
EST: gi|77579499|gb|DV218588.1|DV218588
EST:     AAATGCATGCAGTAGTAGTAGATATTCTGAAGCAAGTAGACTTTAATACT                         GCAACTTTATCAGATATTCTCAGGCAACTTG
genomic: AAATGCATGCAGTAGTAGTAGATATTCTGAAGCAAGTAGACTTTAATACTgtaagtagtg ... cccaatgcagGCAACTTTATCAGATATTCTCAGGCAACTTG
EST: gi|110363707|gb|EC927317.1|EC927317
EST:     AAATGCATGCAGTAGTAGTAGATATTCTGAAGCAAGTAGACTTTAATACT                         GCAACTTTATCAGATATTCTCAGGCAACTTG
genomic: AAATGCATGCAGTAGTAGTAGATATTCTGAAGCAAGTAGACTTTAATACTgtaagtagtg ... cccaatgcagGCAACTTTATCAGATATTCTCAGGCAACTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcaggtttcctgtagttatcattctcaaagtttcacttctttgtcccaatgcagGCAACTTTATCAGATATTCTCAGGCAACTTG
                               tttcacttctttgtcc  CT-rich tract
                ttatcatt  TA-rich tract