1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttacaaaatgtttaggttttttctctcttttttattctctgacttttggctaactgtgaagtcattcttatttgcggactgtttttctatttttatacagTGGTGTGATTGGATTTCTATTGTGCTCAACTGAGGGGCCACCTGTGGATTTCTTGCATCCTGTTAACCCAATTGAGAAGTTAGAAGGCAATCTCAAGTGT
species | Vitis vinifera |
transcript | Vv16s0050g02670.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTCAAGGGTTCGGTCCATTATGCATGGGCAAGTGTTCCTACATATCCAAG TGGTGTGATTGGATTTCTATTGTGCTCAACTGAGGGGCCACCTGTGGATTTEST: gi|110687699|gb|EE065403.1|EE065403
genomic: TTCAAGGGTTCGGTCCATTATGCATGGGCAAGTGTTCCTACATATCCAAGgtaatcatgt ... ttttatacagTGGTGTGATTGGATTTCTATTGTGCTCAACTGAGGGGCCACCTGTGGATTT
EST: TTCAAGGGTTCGGTCCATTATGCATGGGCAAGTGTTCCTACATATCCAAG TGGTGTGATTGGATTTCTATTGTGCTCAACTGAGGGGCCACCTGTGGATTT
genomic: TTCAAGGGTTCGGTCCATTATGCATGGGCAAGTGTTCCTACATATCCAAGgtaatcatgt ... ttttatacagTGGTGTGATTGGATTTCTATTGTGCTCAACTGAGGGGCCACCTGTGGATTT
ttggctaactgtgaagtcattcttatttgcggactgtttttctatttttatacagTGGTGTGATTGGATTTCTATTGTGCTCAACTGAGGGGCCACCTGTGGATTTCTTGCATCCTGTTAACCCAATTGAGAAGTTAGAAGGCAATCTCAAGTGT
ggctaac putative branch site (score: 2)
ctgtttttctattttt putative PPT
tgtttttctattttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttacaaaatgtttaggttttttctctcttttttattctctgacttttggctaactgtgaagtcattcttatttgcggactgtttttctatttttatacagTGGTGTGATTGGATTTCTATTGTGCTCAACTGAGGGGCCACCTGTGGATTTCTTGCATCCTGTTAACCCAATTGAGAAGTTAGAAGGCAATCTCAAGTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- acaaaat
- - - - - - - - - - -tctctct
- - - - - - - - - - - - - - - - - - - - - cttttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaagtc