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gtaatatatctactctttttctaaattttttttctgggtagttgctgataataccatgaagagctgtggaataacaagaaatacccgtgttgaagtttctaactgataatctaccttatacattttgacagGTTCTTGGAAAATGTCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGTCTAGGCTCCATTG
species | Vitis vinifera |
transcript | Vv16s0050g02480.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GATACAATTTGGATCCCTTGTCCCAACACACTGACCATGAAATATGGGAG GTTCTTGGAAAATGTCAGCTTCGGGAGGCTGTCCAGGAAAAGEST: gi|110699494|gb|EE076542.1|EE076542
genomic: GATACAATTTGGATCCCTTGTCCCAACACACTGACCATGAAATATGGGAGgtaatatatc ... attttgacagGTTCTTGGAAAATGTCAGCTTCAGGAGGCTGTCCAGGAAAAG
EST: GATACAATTTGGATCCCTTGTCCCAACACACTGACCATGAAATATGGGAG GTTCTTGGAAAATGTCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGTEST: gi|110713613|gb|EE089685.1|EE089685
genomic: GATACAATTTGGATCCCTTGTCCCAACACACTGACCATGAAATATGGGAGgtaatatatc ... attttgacagGTTCTTGGAAAATGTCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGT
EST: GATACAATTTGGATCCCTTGTCCCAACACACTGACCATGAAATATGGGAG GTTCTTGGAAAATGTCAGCTTCAGGAAGCTGTCCAGGAAAAAGAAGAGGGTEST: gi|32268391|gb|CD717550.1|CD717550
genomic: GATACAATTTGGATCCCTTGTCCCAACACACTGACCATGAAATATGGGAGgtaatatatc ... attttgacagGTTCTTGGAAAATGTCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGT
EST: GATACAATTTGGATCCCTTGTCCCAACACACTGACCATGAAATATGNGAG GTTCTTGNAAAATGTCAGCTTCGGGAGGCTGTCCAGGAAAAGEST: gi|30323099|gb|CD006361.1|CD006361
genomic: GATACAATTTGGATCCCTTGTCCCAACACACTGACCATGAAATATGGGAGgtaatatatc ... attttgacagGTTCTTGGAAAATGTCAGCTTCAGGAGGCTGTCCAGGAAAAG
EST: GATACAATTTGGATCCCTTGTCCCAACACACTGACCATGAAATATGGGAG GTTCTTGGAAAATGTCAGCTTCGGGAGGCTGTCCAEST: gi|34362924|gb|CF404509.1|CF404509
genomic: GATACAATTTGGATCCCTTGTCCCAACACACTGACCATGAAATATGGGAGgtaatatatc ... attttgacagGTTCTTGGAAAATGTCAGCTTCAGGAGGCTGTCCA
EST: GATACAATTTGGATCCCTTGTCCCAACACCCTGACCATGAAATATGGGAG GTTCTTGGAAAATGTCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGTEST: gi|30300431|gb|CB977225.1|CB977225
genomic: GATACAATTTGGATCCCTTGTCCCAACACACTGACCATGAAATATGGGAGgtaatatatc ... attttgacagGTTCTTGGAAAATGTCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGT
EST: GATACAATTTGGATCCCTTGTCCCAACCCCCTGACCATGAAATATGGGAG GTTCTTGGAAAATGTCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGTEST: gi|110695979|gb|EE074612.1|EE074612
genomic: GATACAATTTGGATCCCTTGTCCCAACACACTGACCATGAAATATGGGAGgtaatatatc ... attttgacagGTTCTTGGAAAATGTCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGT
EST: TGAAATATGGGAG GTTCTTGGAAAATGTCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGTEST: gi|32249769|gb|CD715588.1|CD715588
genomic: TGAAATATGGGAGgtaatatatc ... attttgacagGTTCTTGGAAAATGTCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGT
EST: GATACAATTTGGATCCCTTGTCCCAACACACTGACCATGAAATATGGGAG GTTCTTGGAAAATGTCAGCTTCGGGAGGCTGTCCAGGAAAAGGAAGAGGGTEST: gi|34542733|gb|CF510965.1|CF510965
genomic: GATACAATTTGGATCCCTTGTCCCAACACACTGACCATGAAATATGGGAGgtaatatatc ... attttgacagGTTCTTGGAAAATGTCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGT
EST: GATACAATTTGGATCCCTTGTCCCAACACACTGACCATGAAATATGGGAG GTTCTTGGAAAATGTCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGTEST: gi|34549752|gb|CF517984.1|CF517984
genomic: GATACAATTTGGATCCCTTGTCCCAACACACTGACCATGAAATATGGGAGgtaatatatc ... attttgacagGTTCTTGGAAAATGTCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGT
EST: GATACAATTTGGATCCCTTGTCCCAACACACTGACCATGAAATATGGGAG GTTCTTGGAAAATGTCAGCTTCGGGAGGCTGTCCAGGAAAAGTTAGAGGGTEST: gi|34542820|gb|CF511052.1|CF511052
genomic: GATACAATTTGGATCCCTTGTCCCAACACACTGACCATGAAATATGGGAGgtaatatatc ... attttgacagGTTCTTGGAAAATGTCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGT
EST: GATACAATTTGGATCCCTTGTCCCAACACACTGACCATGAAATATGGGAG GTTCTTGGAAAATGTCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGT
genomic: GATACAATTTGGATCCCTTGTCCCAACACACTGACCATGAAATATGGGAGgtaatatatc ... attttgacagGTTCTTGGAAAATGTCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGT
agaaatacccgtgttgaagtttctaactgataatctaccttatacattttgacagGTTCTTGGAAAATGTCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGTCTAGGCTCCATTG
ttatacatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatatatctactctttttctaaattttttttctgggtagttgctgataataccatgaagagctgtggaataacaagaaatacccgtgttgaagtttctaactgataatctaccttatacattttgacagGTTCTTGGAAAATGTCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGTCTAGGCTCCATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG