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...ccctccttattgcgctttgttgaattaaaatttgctttatataattcttgtttcattgtttgcttatttattgtgctgacatcgatggatatttctacagTAACATTGTGGATGTCAGCTCCTATGATGAGCTGAAAGAGGCCATTTCTCAGGGAAAATGGGCAAGGGGTCCTTGGTCGGCTAG
species | Vitis vinifera |
transcript | Vv16s0050g00960.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GATGAGATTCAGTCATCACTTTTGGAAAGGGCAATGTCCTATCGAGATAG TAACATTGTGGATGTCAGCTCCTATGATGAGCTGAAAGAGGCCATTTCTCAEST: gi|110371250|gb|EC935115.1|EC935115
genomic: GATGAGATTCAGTCATCACTTTTGGAAAGGGCAACGTCCTATCGAGATAGgcaagttttg ... atttctacagTAACATTGTGGATGTCAGCTCCTATGATGAGCTGAAAGAGGCCATTTCTCA
EST: GGAAAGGGCAATGTCCTATCGAGATAG TAACATTGTGGATGTCAGCTCCTATGATGAGCTGAAAGAGGCCATTTCTCAEST: gi|351023829|gb|FQ448380.1|FQ448380
genomic: GGAAAGGGCAACGTCCTATCGAGATAGgcaagttttg ... atttctacagTAACATTGTGGATGTCAGCTCCTATGATGAGCTGAAAGAGGCCATTTCTCA
EST: GATGAGATTCAGTCATCACTTTTGGAAAGGGCAATGTCCTATCGAGATAG TAACATTGTGGATGTCAGCTCCTATGATGAGCTGAAAGAGGCCATTTCTCAEST: gi|30132227|gb|CB917566.1|CB917566
genomic: GATGAGATTCAGTCATCACTTTTGGAAAGGGCAACGTCCTATCGAGATAGgcaagttttg ... atttctacagTAACATTGTGGATGTCAGCTCCTATGATGAGCTGAAAGAGGCCATTTCTCA
EST: GATGAGATTCAGTCATCACTTTTGGAAAGGGCAATGTCCTATCGAGATAG TAACATTGTGGATGTCAGCTCCTATGATGAGCTGAAAGAGGCCATTTCTCAEST: gi|351033120|gb|FQ446473.1|FQ446473
genomic: GATGAGATTCAGTCATCACTTTTGGAAAGGGCAACGTCCTATCGAGATAGgcaagttttg ... atttctacagTAACATTGTGGATGTCAGCTCCTATGATGAGCTGAAAGAGGCCATTTCTCA
EST: GATGAGATTCAGTCATCACTTTTGGAAAGGGCAATGTCCTATCGAGATAG TAACATTGTGGATGTCAGCTCCTATGATGAGCTGAAAGAGGCCATTTCTCA
genomic: GATGAGATTCAGTCATCACTTTTGGAAAGGGCAACGTCCTATCGAGATAGgcaagttttg ... atttctacagTAACATTGTGGATGTCAGCTCCTATGATGAGCTGAAAGAGGCCATTTCTCA
tcttgtttcattgtttgcttatttattgtgctgacatcgatggatatttctacagTAACATTGTGGATGTCAGCTCCTATGATGAGCTGAAAGAGGCCATTTCTCAGGGAAAATGGGCAAGGGGTCCTTGGTCGGCTAG
tgctgac putative branch site (score: 2)
tatttct putative PPT
tttgcttatttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccctccttattgcgctttgttgaattaaaatttgctttatataattcttgtttcattgtttgcttatttattgtgctgacatcgatggatatttctacagTAACATTGTGGATGTCAGCTCCTATGATGAGCTGAAAGAGGCCATTTCTCAGGGAAAATGGGCAAGGGGTCCTTGGTCGGCTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
ccctcct
- - - - - - - - - - - aattaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgacat