Sequence
atgc intronic sequence ATGC exonic sequence...tatgtgacatatataaatattttatcgattaacttccattctagaattaatttgctgtagggttaattttgatgatggatattgtgcattttatttgcagCACAAGTGTGATCTCATCAACATGAGTTATGGAGAACCTACAATGCTGCCTGATTATGGACGATTTGTTGACCTTGTTAATGAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0050g00490.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA09G25250.1 (Glycine max), 3'ss of exon 9
--------------------------------------------------------------------------tatgtgacatatataaatattttatcgattaacttccattctagaat----taatttgctgtagggttaattttgatgatggatattgtgcattttatttgcagCACAAGTGTGATCTCATCAACATGAGTTATGGAGAACCTACAATGCTGCCTGATTATGGACGATTTGTTGACCTTGTTAATGAA
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gtgcttcaaaattttcttctttttactcctctttaactgattatcctggatattttgacaagtgaaatataatttgcctttgatttttgtgtgtctgatgaactgagttt-gttttaggatcttataacatcctgcataag-acttttattgatgggcatgcagtatttctttttcagCATAAGTGTGACCTTATCAATATGAGTTATGGTGAAGCAACATTACTGCCAGACTATGGACGCTTTGTTGATCTTGTGAATGAG
upper sequence: Vv16s0050g00490.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA10G37900.1 (Glycine max), 3'ss of exon 9
---------------------------------------------------------------tatgtgacatatataaatattttatcgattaacttccattctagaattaatttgc--------tgtagggttaattttgatgatggatattgtgcattttatttgcagCACAAGTGTGATCTCATCAACATGAGTTATGGAGAACCTACAATGCTGCCTGATTATGGACGATTTGTTGACCTTGTTAATGAA
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gtggttcaaatattttattctttattgcatgactatactgcagatttcaacaattgatatagatttgtctttaatatttgtgtttgacgtaagtaattttgttttagaattttttgatgtttgacatgaatatttcattgtagtgatgaccttgtctcatttctttggcagCATAAATGTGATCTTATCAATATGAGTTATGGTGAGCCTACATCACTGCCAGACTATGGACGGTTCGTTGACCTTGCGAATGAA
upper sequence: Vv16s0050g00490.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA16G30190.1 (Glycine max), 3'ss of exon 9
--------------------------------------------------------------------------tatgtgacatatataaatattttatcgattaacttccattctagaat----taatttgctgtagggttaa---ttttgatgatggatattgtgcattttatttgcagCACAAGTGTGATCTCATCAACATGAGTTATGGAGAACCTACAATGCTGCCTGATTATGGACGATTTGTTGACCTTGTTAATGAA
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gtgctgcaaatttttctcctttttcctcctctttagctgattattctggatattttgacaagtgaaatatgatttgcctttgatttttgtgtgtttgatcaactgagttt-gttttaggatcttataacatcctgcataagtaggacttttaatgatgggcgtgcaatatttctttttcagCATAAGTGTGACCTTATCAACATGAGTTATGGCGAAGCAACGTTACTGCCAGACTATGGGCGCTTTGTTGATCTTGTGAATGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attaatttgctgtagggttaattttgatgatggatattgtgcattttatttgcagCACAAGTGTGATCTCATCAACATGAGTTATGGAGAACCTACAATGCTGCCTGATTATGGACGATTTGTTGACCTTGTTAATGAA
ttttattt CT-rich tract
ttaattttgatgat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tatgtgacatatataaatattttatcgattaacttccattctagaattaatttgctgtagggttaattttgatgatggatattgtgcattttatttgcagCACAAGTGTGATCTCATCAACATGAGTTATGGAGAACCTACAATGCTGCCTGATTATGGACGATTTGTTGACCTTGTTAATGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - ataaata
- - - - - - - - - - - - - - - - - -ccattct
- - - - - - - - - - - - - - - - - - - - - agaattaa
- - - - - - - - - - - - - - - - - - - - - - - - - - tgctgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgcatt