1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...catttgaaaacacatttaaatgaaatatttctttcatgcagtttggtatattcctgaaattgtaataatggaattattatttgcttatttactttttcagATCCAGAGAAGGCTGTGTGTGCTGTTACCGGATTGCCTGCCAA
species | Vitis vinifera |
transcript | Vv16s0039g02650.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
gtatattcctgaaattgtaataatggaattattatttgcttatttactttttcagATCCAGAGAAGGCTGTGTGTGCTGTTACCGGATTGCCTGCCAA
cttatttactttttc CT-rich tract
aaattgtaataatgga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catttgaaaacacatttaaatgaaatatttctttcatgcagtttggtatattcctgaaattgtaataatggaattattatttgcttatttactttttcagATCCAGAGAAGGCTGTGTGTGCTGTTACCGGATTGCCTGCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - -gaaaaca
- - - - - - - - -aaatgaa
- - - - - - - - - - - - - - - - -tcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatggaa