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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatgccaatccattttcatatgtctcttatggttttgaatagattatgtgatgcatagagatatatattatttttttcagGCAATAGTGGGGTTGCTGTAATGCTTTTTGATCCAAGAAGGTCAAATATTTCTAAGATAGAACGAGAGTCTGGAGTAAAATTCGAACATGTATCTGCTCC

Basic information

species Vitis vinifera
transcript Vv16s0022g02110.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0022g02110.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA20G29060.1 (Glycine max), 3'ss of exon 9
--gtaaatgcca-atccattttcatatgtctcttatggttttgaatagatt-atgtgatgcatagagatatatattattttt-ttcagGCAATAGTGGGGTTGCTGTAATGCTTTTTGATCCAAGAAGGTCAAATATTTCTAAGATAGAACGAGAGTCTGGAGTAAAATTCGAACATGTATCTGCTCC
   |   | |   ||    | |    |  || || || | ||| |   ||| || | | |  || |      | |  ||||| |||||| |||| |||||||||||| ||||||| ||| |||| ||| || || || ||||  |||||  |||||||||| |||||||| ||||| |||||||||||
gtatctttacaggatttgctattggtttactattgtgatattggagttattgattttaaggttatactgtggtttggtttttattcagGTAATACTGGGGTTGCTGTTATGCTTTATGACCCAAAAAGATCGAACATATCTAGAATAGAGAGAGAGTCTGGTGTAAAATTTGAACACGTATCTGCTCC

upper sequence: Vv16s0022g02110.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA10G38680.1 (Glycine max), 3'ss of exon 9
gtaaatgccaatccattttcatatgtctcttatggttttg----aatagattatgtgatgcatagagatat----atattattttt-ttcagGCAATAGTGGGGTTGCTGTAATGCTTTTTGATCCAAGAAGGTCAAATATTTCTAAGATAGAACGAGAGTCTGGAGTAAAATTCGAACATGTATCTGCTCC
|||  |    |    ||   ||  |  |  |||||  |||    | | || |    |||  |  |  |||      | || ||||| |||||| |||| |||||||||||| ||||||| |||||||| ||| || || ||  |||  |||||| ||||||| || |||||||| ||||| ||||| || ||
gtatttctacaggatttgctattggcttactatgggattgtgatattggagttatcgatttaaggttatactgtggttttgtttttattcagGTAATACTGGGGTTGCTGTCATGCTTTATGATCCAAAAAGATCTAACATACCTAGAATAGAAAGAGAGTCCGGTGTAAAATTTGAACACGTATCCGCCCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351046770|gb|FQ454380.1|FQ454380
EST:     TCGAGATGTTGAAGCCTACATCCATCGATCTGGACGCACAGGAAGAGCAG                         GCAATAGTGGGGTTGCTGTAATGCTTTTTGATCCAAGAAGGTCAAATATTT
genomic: TCGAGATGTTGAAGCTTACATCCATCGATCTGGACGCACAGGAAGAGCAGgtaaatgcca ... tttttttcagGCAATAGTGGGGTTGCTGTAATGCTTTTTGATCCAAGAAGGTCAAATATTT
EST: gi|349818664|gb|FQ403498.1|FQ403498
EST:     TCGAGATGTTGAAGCTTACATCCATCGATCTGGACGCACAGGAAGAGCAG                         GCAATAGTGGGGTTGCTGTAATGCTTTTTGATCCAAGAAGGTCAAATATTT
genomic: TCGAGATGTTGAAGCTTACATCCATCGATCTGGACGCACAGGAAGAGCAGgtaaatgcca ... tttttttcagGCAATAGTGGGGTTGCTGTAATGCTTTTTGATCCAAGAAGGTCAAATATTT
EST: gi|351040229|gb|FQ425315.1|FQ425315
EST:     TCGAGATGTTGAAGCTTACATCCATCGATCTGGACGCACAGGAAGAGCAG                         GCAATAGTGGGGTTGCTGTAATGCTTTTTGATCCAAGAAGGTCAAATATTT
genomic: TCGAGATGTTGAAGCTTACATCCATCGATCTGGACGCACAGGAAGAGCAGgtaaatgcca ... tttttttcagGCAATAGTGGGGTTGCTGTAATGCTTTTTGATCCAAGAAGGTCAAATATTT
EST: gi|352790432|gb|FQ478072.1|FQ478072
EST:     TCGAGATGTTGAAGCTTACATCCATCGATCTGGACGCACAGGAAGAGCAG                         GCAATAGTGGGGTTGCTGTAATGCTTTTTGATCCAAGAAGGTCAAATATTT
genomic: TCGAGATGTTGAAGCTTACATCCATCGATCTGGACGCACAGGAAGAGCAGgtaaatgcca ... tttttttcagGCAATAGTGGGGTTGCTGTAATGCTTTTTGATCCAAGAAGGTCAAATATTT
EST: gi|351048608|gb|FQ448882.1|FQ448882
EST:     TCGAGATGTTGAAGCTTACATCCATCGATCTGGACGCACAGGAAGAGCAG                         GCAATAGTGGGGTTGCTGTAATGCTTTTTGATCCAAGAAGGTCAAATATTT
genomic: TCGAGATGTTGAAGCTTACATCCATCGATCTGGACGCACAGGAAGAGCAGgtaaatgcca ... tttttttcagGCAATAGTGGGGTTGCTGTAATGCTTTTTGATCCAAGAAGGTCAAATATTT
EST: gi|351033398|gb|FQ462049.1|FQ462049
EST:     TCGAGATGTTGAAGCTTACATCCATCGATCTGGACGCACAGGAAGAGCAG                         GCAATAGTGGGGTTGCTGTAATGCTTTTTGATCCAAGAAGGTCAAATATTT
genomic: TCGAGATGTTGAAGCTTACATCCATCGATCTGGACGCACAGGAAGAGCAGgtaaatgcca ... tttttttcagGCAATAGTGGGGTTGCTGTAATGCTTTTTGATCCAAGAAGGTCAAATATTT
EST: gi|161720145|gb|FC066753.1|FC066753
EST:     TCGAGATGTTGAAGCTTACATCCATCGATCTGGACGCACAGGAAGAGCAG                         GCAATAGTGGGGTTGCTGTAATGCTTTTTGATCCAAGAAGGTCAAATATTT
genomic: TCGAGATGTTGAAGCTTACATCCATCGATCTGGACGCACAGGAAGAGCAGgtaaatgcca ... tttttttcagGCAATAGTGGGGTTGCTGTAATGCTTTTTGATCCAAGAAGGTCAAATATTT
EST: gi|161709071|gb|FC058368.1|FC058368
EST:     TCGAGATGTTGAAGCTTACATCCATCGATCTGGACGCACAGGAAGAGCAG                         GCAATAGTGGGGTTGCTGTAATGCTTTTTGATCCAAGAAGGTCAAATATTT
genomic: TCGAGATGTTGAAGCTTACATCCATCGATCTGGACGCACAGGAAGAGCAGgtaaatgcca ... tttttttcagGCAATAGTGGGGTTGCTGTAATGCTTTTTGATCCAAGAAGGTCAAATATTT
EST: gi|351039800|gb|FQ464838.1|FQ464838
EST:     TCGAGATGTTGAAGCTTACATCCATCGATCTGGACGCACAGGAAGAGCAG                         GCAATAGTGGGGTTGCTGTAATGCTTTTTGATCCAAGAAGGTCAAATATTT
genomic: TCGAGATGTTGAAGCTTACATCCATCGATCTGGACGCACAGGAAGAGCAGgtaaatgcca ... tttttttcagGCAATAGTGGGGTTGCTGTAATGCTTTTTGATCCAAGAAGGTCAAATATTT
EST: gi|349809274|gb|FQ399048.1|FQ399048
EST:     TCGAGATGTTGAAGCTTACATCCATCGATCTGGACGCACAGGAAGAGCAG                         GCAATAGTGGGGTTGCTGTAATGCTTTTTGATCCAAGAAGGTCAAATATTT
genomic: TCGAGATGTTGAAGCTTACATCCATCGATCTGGACGCACAGGAAGAGCAGgtaaatgcca ... tttttttcagGCAATAGTGGGGTTGCTGTAATGCTTTTTGATCCAAGAAGGTCAAATATTT
EST: gi|352798464|gb|FQ480489.1|FQ480489
EST:     TCGAGATGTTGAAGCTTACATCCATCGATCTGGACGCACAGGAAGAGCAG                         GCAATAGTGGGGTTGCTGTAATGCTTTTTGATCCAAGAAGGTCAAATATTT
genomic: TCGAGATGTTGAAGCTTACATCCATCGATCTGGACGCACAGGAAGAGCAGgtaaatgcca ... tttttttcagGCAATAGTGGGGTTGCTGTAATGCTTTTTGATCCAAGAAGGTCAAATATTT
EST: gi|110391302|gb|EC956267.1|EC956267
EST:     TGTTGAAGCTTACATCCATCGATCTGGACGCACAGGAAGAGCAG                         GCAATAGTGGGGTTGCTGTAATGCTTTTTGATCCAAGAAGGTCAAATATTT
genomic: TGTTGAAGCTTACATCCATCGATCTGGACGCACAGGAAGAGCAGgtaaatgcca ... tttttttcagGCAATAGTGGGGTTGCTGTAATGCTTTTTGATCCAAGAAGGTCAAATATTT
EST: gi|349812243|gb|FQ411838.1|FQ411838
EST:     TCGAGATGTTGAAGCTTACATCCATCGATCTGGACGCACAGGAAGAGCAG                         GCAATAGTGGGGTTGCTGTAATGCTTTTTGATCCAAGAAGGTCAAATATTT
genomic: TCGAGATGTTGAAGCTTACATCCATCGATCTGGACGCACAGGAAGAGCAGgtaaatgcca ... tttttttcagGCAATAGTGGGGTTGCTGTAATGCTTTTTGATCCAAGAAGGTCAAATATTT
EST: gi|351056075|gb|FQ453536.1|FQ453536
EST:     TCGAGATGTTGAAGCTTACATCCATCGATCTGGACGCACAGGAAGAGCAG                         GCAATAGTGGGGTTGCTGTAATGCTTTTTGATCCAAGAAGGTCAAATATTT
genomic: TCGAGATGTTGAAGCTTACATCCATCGATCTGGACGCACAGGAAGAGCAGgtaaatgcca ... tttttttcagGCAATAGTGGGGTTGCTGTAATGCTTTTTGATCCAAGAAGGTCAAATATTT
EST: gi|71870308|gb|DT019363.1|DT019363
EST:     TCGAGATGTTGAAGCTTACATCCATCGATCTGGACGCACAGGAAGAGCAG                         GCAATAGTGGGGTTGCTGTAATGCTTTTTGATCCAAGAAGGTCAAATATTT
genomic: TCGAGATGTTGAAGCTTACATCCATCGATCTGGACGCACAGGAAGAGCAGgtaaatgcca ... tttttttcagGCAATAGTGGGGTTGCTGTAATGCTTTTTGATCCAAGAAGGTCAAATATTT
EST: gi|161720948|gb|FC070676.1|FC070676
EST:     TCGAGATGTTGAAGCTTACATCCATCGATCTGGACGCACAGGAAGAGCAG                         GCAATAGTGGGGTTGCTGTAATGCTTTTTGATCCAAGAAGGTCAAATATTT
genomic: TCGAGATGTTGAAGCTTACATCCATCGATCTGGACGCACAGGAAGAGCAGgtaaatgcca ... tttttttcagGCAATAGTGGGGTTGCTGTAATGCTTTTTGATCCAAGAAGGTCAAATATTT
EST: gi|351055609|gb|FQ452074.1|FQ452074
EST:     TCGAGATGTTGAAGCTTACATCCATCGATCTGGACGCACAGGAAGAGCAG                         GCAATAGTGGGGTTGCTGTAATGCTTTTTGATCCAAGAAGGTCAAATATTT
genomic: TCGAGATGTTGAAGCTTACATCCATCGATCTGGACGCACAGGAAGAGCAGgtaaatgcca ... tttttttcagGCAATAGTGGGGTTGCTGTAATGCTTTTTGATCCAAGAAGGTCAAATATTT
EST: gi|30253071|gb|CB970622.1|CB970622
EST:     TCGAGATGTTGAAGCTTACATCCATCGATCTGGACGCACAGGAAGAGCAG                         GCAATAGTGGGGTTGCTGTAATGCTTTTTGATCCAAGAAGGTCAAATATTT
genomic: TCGAGATGTTGAAGCTTACATCCATCGATCTGGACGCACAGGAAGAGCAGgtaaatgcca ... tttttttcagGCAATAGTGGGGTTGCTGTAATGCTTTTTGATCCAAGAAGGTCAAATATTT
EST: gi|351012917|gb|FQ430480.1|FQ430480
EST:     TCGAGATGTTGAAGCTTACATCCATCGATCTGGACGCACAGGAAGAGCAG                         GCAATAGTGGGGTTGCTGTAATGCTTTTTGATCCAAGAAGGTCAAATATTT
genomic: TCGAGATGTTGAAGCTTACATCCATCGATCTGGACGCACAGGAAGAGCAGgtaaatgcca ... tttttttcagGCAATAGTGGGGTTGCTGTAATGCTTTTTGATCCAAGAAGGTCAAATATTT
EST: gi|110690637|gb|EE067971.1|EE067971
EST:     TCGAGATGTTGAAGCTTACATCCATCGATCTGGACGCACAGGAAGAGCAG                         GCAATAGTGGGGTTGCTGTAATGCTTTTTGATCCAAGAAGGTCAAATATTT
genomic: TCGAGATGTTGAAGCTTACATCCATCGATCTGGACGCACAGGAAGAGCAGgtaaatgcca ... tttttttcagGCAATAGTGGGGTTGCTGTAATGCTTTTTGATCCAAGAAGGTCAAATATTT
EST: gi|351052845|gb|FQ456573.1|FQ456573
EST:     TCGAGATGTTGAAGCTTACATCCATCGATCTGGACGCACAGGAAGAGCAG                         GCAATAGTGGGGTTGCTGTAATGCTTTTTGATCCAAGAAGGTCAAATATTT
genomic: TCGAGATGTTGAAGCTTACATCCATCGATCTGGACGCACAGGAAGAGCAGgtaaatgcca ... tttttttcagGCAATAGTGGGGTTGCTGTAATGCTTTTTGATCCAAGAAGGTCAAATATTT
EST: gi|351035558|gb|FQ463403.1|FQ463403
EST:     TCGAGATGTTGAAGCTTACACCCATCGATCTGGACGCACAGGAAGAGCAG                         GCAATAGTGGGGTTGCTGTAATGCTTTTTGATCCAAGAAGGTCAAATATTT
genomic: TCGAGATGTTGAAGCTTACATCCATCGATCTGGACGCACAGGAAGAGCAGgtaaatgcca ... tttttttcagGCAATAGTGGGGTTGCTGTAATGCTTTTTGATCCAAGAAGGTCAAATATTT
EST: gi|349807331|gb|FQ401323.1|FQ401323
EST:     TCGAGATGTTGAAGCTTGCATCCATCGATCTGGACGCACAGGAAGAGCAG                         GCAATAGTGGGGTTGCTGTAATGCTTTTTGATCCAAGAAGGTCAAATATTT
genomic: TCGAGATGTTGAAGCTTACATCCATCGATCTGGACGCACAGGAAGAGCAGgtaaatgcca ... tttttttcagGCAATAGTGGGGTTGCTGTAATGCTTTTTGATCCAAGAAGGTCAAATATTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttatggttttgaatagattatgtgatgcatagagatatatattatttttttcagGCAATAGTGGGGTTGCTGTAATGCTTTTTGATCCAAGAAGGTCAAATATTTCTAAGATAGAACGAGAGTCTGGAGTAAAATTCGAACATGTATCTGCTCC
                                          ttatttttttc  CT-rich tract
                         atgcatagagatatat  TA-rich tract