Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggtgttgataatcaattattatgttgactgtaattatcgaatctggttttgtggctcttatataaatggttgctaagcttcagaatctgttcactttgtagTTATGTGGAGCAAAGTTGTCGGAGGGTGTATTTGTTGGTTCCTTCTTATCAATGTCATCAACAGCAGTG

Basic information

species Vitis vinifera
transcript Vv16s0022g02060.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0022g02060.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA09G27940.1 (Glycine max), 3'ss of exon 10
gtatggtgttga-taatcaattattatgttgactgtaattatcgaatctggttttgtggctcttatataaatggttgctaagcttcagaatctgttcactttgtagTTATGTGGAGCAAAGTTGTCGGAGGGTGTATTTGTTGGTTCCTTCTTATCAATGTCATCAACAGCAGTG
|||||||| ||| |  ||   |||  | |||| |  | |||  || |       |     | || ||||| |||   | || | | |   ||  ||   |||| |||||| |||||| || ||||| |||||||| ||||| ||||||||  |||||||||||||||||||||||
gtatggtgctgacttgtctgatatggtcttgaatagagttaaggagt-------tacaattgttttataa-tggacaccaaacattattgtccatttggtttgcagTTATTTGGAGCCAAATTGTCTGAGGGTGTTTTTGTCGGTTCCTTTCTATCAATGTCATCAACAGCAGTG

upper sequence: Vv16s0022g02060.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA16G32820.1 (Glycine max), 3'ss of exon 6
--gtatggtgttgata-atcaattattatgttgactgtaattatcgaatctggttttgtggctcttatataaatggttgctaagcttcagaatctgttcactttgtagTTATGTGGAGCAAAGTTGTCGGAGGGTGTATTTGTTGGTTCCTTCTTATCAATGTCATCAACAGCAGTG
  |||||||| |||    ||   |||  | |||| |  | |||  || |       |     | || ||||| |||   | || | | |   ||  ||   |||| |||||| |||||| || ||||| |||||||| ||||| ||||||||  | ||||||||||| |||||||||
tggtatggtgctgacgtgtctgatatgttcttgaatagagttaaggagt-------tacaattgttttataa-tggacaccaaacattattgtccatttggtttgcagTTATTTGGAGCCAAATTGTCTGAGGGTGTTTTTGTCGGTTCCTTTCTGTCAATGTCATCTACAGCAGTG

upper sequence: Vv16s0022g02060.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT5G51710.1 (Arabidopsis thaliana), 3'ss of exon 9
gtatggtgttgataatcaattattatgttgactgtaattatcgaatctggttttgtggctcttatataaatggttgctaagcttcagaatctgttcac-tttgtagTTATGTGGAGCAAAGTTGTCGGAGGGTGTATTTGTTGGTTCCTTCTTATCAATGTCATCAACAGCAGTG
                       ||||   |  |   | |     | ||  | |  |||  |  |  ||||  ||  ||   || | | |||| | || | || |||| |||||||||| |||||| |||||| | ||||||||| |||| ||||| ||||||||||| ||||||
----------------------gtatggccaaagatttcagtatgtgtgcatatacggcaatcttg-aaattatttttagaattgata-tctgatgacatgtgcagTTGTGTGGAGCAAGGTTGTCAGAGGGTATTTTTGTTGGTGCCTTTTTATCTATGTCATCAACTGCAGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgtggctcttatataaatggttgctaagcttcagaatctgttcactttgtagTTATGTGGAGCAAAGTTGTCGGAGGGTGTATTTGTTGGTTCCTTCTTATCAATGTCATCAACAGCAGTG
                                           ttcacttt  CT-rich tract
           ttatataaatggtt  TA-rich tract