Sequence
atgc intronic sequence ATGC exonic sequencegtaagctttctagtttagatcattcttttggaaactggacaaatgaaagttatttacttggggaagagcattgatcaatgttgtgaaatgattggtgacatgatttaagataaaactcttggttctttaatcagGTCACTCCAAGGAAATAAGCTAACAGGAAAGATTCCAGAGGTGATTGGTCTAATGCAAGCCCTTGCTGTTTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0022g02030.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA10G38730.1 (Glycine max), 3'ss of exon 10
----------------------------------------------------gtaagctttctagtttagatcattcttttggaaactggacaaatgaaagttatttacttggggaagagcattgatcaatgttgtgaaatgattggtga-catgatttaagataaaactcttggttctttaatcagGTCACTCCAAGGAAATAAGCTAACAGGAAAGATTCCAGAGGTGATTGGTCTAATGCAAGCCCTTGCTGTTTT
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gtgagtactttgactgtgaagttattgttttaatgttacacttagcactactatgaatcacttgctttctgtcttctctctctt--cttgacaaaggt---ttattttgtttgagaatgtgattggtca-tgttatatggagaaggataagtatatgttcacgtatgaatgtt--ttttctgcctagGTCACTTCAAGGAAATAGACTAACTGGGAAGATTCCAGAAGTGATTGGTTTAATGCAAGCCCTTGCAATATT
upper sequence: Vv16s0022g02030.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA20G29010.1 (Glycine max), 3'ss of exon 7
gtaagctt--tctagtttagatcattc---ttttggaaactggacaaatgaaagttatttacttggggaagagcattgatcaa-tgttgtgaaat--gattggtgacatgatttaagataa---aactcttggttctttaatcagGTCACTCCAAGGAAATAAGCTAACAGGAAAGATTCCAGAGGTGATTGGTCTAATGCAAGCCCTTGCTGTTTT
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gtacgtatactttgactgaagttattttaattatggcactactgtgaatcacttttgtttgacaatggtggactggtgggggggtcatgtcatattgaaaggataagtatatttatgatcaattatcactgcaatttctgcctagGTCACTTCAAGGAAATAGATTAACTGGGGAGATTCCAGAAGTGATTGGTTTAATGCAAGCCCTTGCAATATT
upper sequence: Vv16s0022g02030.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA16G32830.1 (Glycine max), 3'ss of exon 10
----------------gtaagctttctagt-ttagatcattcttttggaa-actggacaaatg---aaagttatttacttggggaagagcattgatcaatgttgtgaaatgattggtgacatgatttaagataaaactcttggttctttaatcagGTCACTCCAAGGAAATAAGCTAACAGGAAAGATTCCAGAGGTGATTGGTCTAATGCAAGCCCTTGCTGTTTT
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gtgagtacatttggctgtggacctgatactactctaatgttttgctgaagtatcagattatcttctaaatatatcacttcctggtagatttttttttgtcatcttgttatctagaattgtatagaatgcaataat-cattgccttctcttcccagGTCGCTTCAAGGAAATAGACTAACTGGGAAGATTCCAGAAGTCATTGGTTTAATGCAAGCACTTGCCATTTT
upper sequence: Vv16s0022g02030.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA09G27950.1 (Glycine max), 3'ss of exon 9
---------gtaagctttctagtttagatcattcttttggaaactggacaaatgaaagttatttacttggggaagagcat--tgatcaatgttgtgaaatgattggtgac-----atgatttaagataaaac--tcttgg--ttctttaatcagGTCACTCCAAGGAAATAAGCTAACAGGAAAGATTCCAGAGGTGATTGGTCTAATGCAAGCCCTTGCTGTTTT
| ||| | | | | | | ||| || ||| || | | |||| | ||| | | | || | || || | | | || | || | || || || || | | |||| | |||||| || |||||||||| ||||| || ||||||||||| || ||||| |||||||||||||||| ||||
gtgagtgcttttggctgtggacatgatactactctaatgttttgctcacatatcaga-ttatcttcttaatatatcacttcctggtagattttttttatcatcttgttatctagaattgtatagaatgcaataatcattgccttctcttcccagGTCGCTTCAAGGAAATAGACTAACTGGGAAGATTCCAGAAGTCTTTGGTTTAATGCAAGCCCTTGCCATTTT
upper sequence: Vv16s0022g02030.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT5G62230.1 (Arabidopsis thaliana), 3'ss of exon 10
gtaagctttctagtttagatcattcttttggaaactggacaaatgaaagttatttacttggggaagagcattgatcaatgttgtgaaatgattggtgacatgatttaagataaaactcttggttctttaatcagGTCACTCCAAGGAAATAAGCTAACAGGAAAGATTCCAGAGGTGATTGGTCTAATGCAAGCCCTTGCTGTTTT
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-----------------------------------gtgagtattgagcctcttttaccttagtttcatcagtaa--attgttaacatgcggttattgaattgtgt---------attattactttttgaa---gGTCACTTCAAGGAAACAGATTGACGGGTAGAATTCCAGAAGTTATTGGTCTAATGCAGGCTCTTGCTGTTTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttgtgaaatgattggtgacatgatttaagataaaactcttggttctttaatcagGTCACTCCAAGGAAATAAGCTAACAGGAAAGATTCCAGAGGTGATTGGTCTAATGCAAGCCCTTGCTGTTTT
ttcttt CT-rich tract
atgatttaagataaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagctttctagtttagatcattcttttggaaactggacaaatgaaagttatttacttggggaagagcattgatcaatgttgtgaaatgattggtgacatgatttaagataaaactcttggttctttaatcagGTCACTCCAAGGAAATAAGCTAACAGGAAAGATTCCAGAGGTGATTGGTCTAATGCAAGCCCTTGCTGTTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT