1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...tagtttgatttatgcctgtggcattataaaatgattacatggtcaacctaaaaaatgaataagatgattcttggttgaagtttatttatttgttttacagGAAAATCTTGTGACAGAAAGGAAAGAAAAACCTGTCTCCATGAATGCCTTCGAGCTTATTTCTAGGTCTCAGAGTTTCAATCTTGAAAACTTGTTCGGGA
species | Vitis vinifera |
transcript | Vv15s0048g02740.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CAATAATTCAGAG GAAAATCTTGTGACAGAAAGGAAAGAAAAACCTGTCTCCATGAATGCCTTCEST: gi|110374736|gb|EC939660.1|EC939660
genomic: CAATAATTCAGAGgtaaggcatt ... tgttttacagGAAAATCTTGTGACAGAAAGGAAAGAAAAACCTGTCTCCATGAATGCCTTC
EST: AAGAGGATGTGAATGTTGATGATGTGGATGCTGCTTTCAATAATTCAGAG GAAAATCTTGTGACAGAAAGGAAAGAAAAACCTGTCTCCATGAATGCCTTCEST: gi|37183540|gb|CF602894.1|CF602894
genomic: AAGAGGATGTGAATGTTGATGATGTGGATGCTGCTTTCAATAATTCAGAGgtaaggcatt ... tgttttacagGAAAATCTTGTGACAGAAAGGAAAGAAAAACCTGTCTCCATGAATGCCTTC
EST: AAGAGGATGTGAATGTTGATGATGTGGATGCTGCTTTCAATAATTCAGAG GAAAATCTTGTGACAGAAAGGAAAGAAAAACCTGTCTCCATGAATGCCTTCEST: gi|110425521|gb|EC991908.1|EC991908
genomic: AAGAGGATGTGAATGTTGATGATGTGGATGCTGCTTTCAATAATTCAGAGgtaaggcatt ... tgttttacagGAAAATCTTGTGACAGAAAGGAAAGAAAAACCTGTCTCCATGAATGCCTTC
EST: AAGAGGATGTGAATGTTGATGATGTGGATGCTGCTTTCAATAATTCAGAG GAAAATCTTGTGACAGAAAGGAAAGAAAAACCTGTCTCCATGAATGCCTTCEST: gi|110687296|gb|EE064582.1|EE064582
genomic: AAGAGGATGTGAATGTTGATGATGTGGATGCTGCTTTCAATAATTCAGAGgtaaggcatt ... tgttttacagGAAAATCTTGTGACAGAAAGGAAAGAAAAACCTGTCTCCATGAATGCCTTC
EST: AAGAGGATGTGAATGTTGATGATGTGGATGCTGCTTTCAATAATTCAGAG GAAAATCTTGTGACAGAAAGGAAAGAAAAACCTGTCTCCATGAATGCCTTC
genomic: AAGAGGATGTGAATGTTGATGATGTGGATGCTGCTTTCAATAATTCAGAGgtaaggcatt ... tgttttacagGAAAATCTTGTGACAGAAAGGAAAGAAAAACCTGTCTCCATGAATGCCTTC
acctaaaaaatgaataagatgattcttggttgaagtttatttatttgttttacagGAAAATCTTGTGACAGAAAGGAAAGAAAAACCTGTCTCCATGAATGCCTTCGAGCTTATTTCTAGGTCTCAGAGTTTCAATCTTGAAAACTTGTTCGGGA
acctaaa putative branch site (score: 3)
tttgtttt putative PPT
ttgaagtttatttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagtttgatttatgcctgtggcattataaaatgattacatggtcaacctaaaaaatgaataagatgattcttggttgaagtttatttatttgttttacagGAAAATCTTGTGACAGAAAGGAAAGAAAAACCTGTCTCCATGAATGCCTTCGAGCTTATTTCTAGGTCTCAGAGTTTCAATCTTGAAAACTTGTTCGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - tgcctgt
- - - - - - - - - -ggcatta
- - - - - - - - - - - - - -aaaatga
- - - - - - - - - - - - - - - - - - -catggtc
- - - - - - - - - - - - - - - - - - - - - - - - -aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcttgg