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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattttttttagaagtgaatttgtgaatgagaacttttggtgaactttggcttcagctgtatgtgcttgttattggaggcttctctttacttctttgtgttcttttatctggactgcagTGCAGGGATTGGTGTGCTTAATATGGCTGCACAGGCTGCCTCAAGGATTGCTGGGAACACTGGGGCATCACCAAATCATCAATTTTATCTACTAGATAAA

Basic information

species Vitis vinifera
transcript Vv15s0046g03670.t01
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110699592|gb|EE076724.1|EE076724
EST:     CCGTTGACTGACTTTGTCAACCAAAAGATAGTTGTAGTTGGAGCAGGAAG                         TGCAGGGATTGGTGTGCTTAATATGGCTGCACAGGCTGCCTCAAGGATTGC
genomic: CCGTTGACTGACTTTGTCAACCAAAAGATAGTTGTAGTTGGAGCAGGAAGgtattttttt ... tggactgcagTGCAGGGATTGGTGTGCTTAATATGGCTGCACAGGCTGCCTCAAGGATTGC
EST: gi|110699700|gb|EE076930.1|EE076930
EST:     CCGTTGACTGACTTTGTCAACCAAAAGATAGTTGTAGTTGGAGCAGGAAG                         TGCAGGGATTGGTGTGCTTAATATGGCTGCACAGGCTGCCTCAAGGATTGC
genomic: CCGTTGACTGACTTTGTCAACCAAAAGATAGTTGTAGTTGGAGCAGGAAGgtattttttt ... tggactgcagTGCAGGGATTGGTGTGCTTAATATGGCTGCACAGGCTGCCTCAAGGATTGC
EST: gi|33404797|gb|CF210424.1|CF210424
EST:     CCGTTGACTGACTTTGTCAACCAAAAGATAGTTGTAGTTGGAGCAGGAAG                         TGCAGGGATTGGTGTGCTTAATATGGCTGCACAGGCTGCCTCAAGGATTGC
genomic: CCGTTGACTGACTTTGTCAACCAAAAGATAGTTGTAGTTGGAGCAGGAAGgtattttttt ... tggactgcagTGCAGGGATTGGTGTGCTTAATATGGCTGCACAGGCTGCCTCAAGGATTGC
EST: gi|161720282|gb|FC070543.1|FC070543
EST:     CCGTTGACTGACTTTGTCAACCAAAAGATAGTTGTAGTTGGAGCAGGAAG                         TGCAGGGATTGGTGTGCTTAATATGGCTGCACAGGCTGCCTCAAGGATTGC
genomic: CCGTTGACTGACTTTGTCAACCAAAAGATAGTTGTAGTTGGAGCAGGAAGgtattttttt ... tggactgcagTGCAGGGATTGGTGTGCTTAATATGGCTGCACAGGCTGCCTCAAGGATTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttgttattggaggcttctctttacttctttgtgttcttttatctggactgcagTGCAGGGATTGGTGTGCTTAATATGGCTGCACAGGCTGCCTCAAGGATTGCTGGGAACACTGGGGCATCACCAAATCATCAATTTTATCTACTAGATAAA
               cttctctttacttctt  CT-rich tract
                                   ttcttttat  TA-rich tract